Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I09
(385 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 30 0.72
01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940... 28 2.2
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44... 28 2.9
11_08_0023 + 27741775-27742475,27744163-27744413,27744557-277447... 27 3.8
04_04_0236 + 23825368-23825763,23826229-23828667 27 3.8
04_03_0623 - 18109311-18109853,18109900-18110495,18111292-181114... 27 6.7
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741... 27 6.7
04_01_0367 + 4834602-4835489,4836117-4836644 27 6.7
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 29.9 bits (64), Expect = 0.72
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Frame = +3
Query: 84 KLKSSKLHFDDKERYERM-PFVKTGCDTFDKYEKNVIDFMD---TLKIKLGL----SNIV 239
+LKS KLH +D+E ++ PFVK + ++V+ L IKL L N
Sbjct: 1739 RLKSIKLHKNDEELLSKLDPFVKLLAECLSSKHESVLSISFRCLALLIKLPLPSLKDNAN 1798
Query: 240 LSEKSLLDLPFRAGAVKHVLLT 305
L + L+D+ RAG L+T
Sbjct: 1799 LIKNVLMDIAQRAGNSNGHLVT 1820
>01_07_0131 +
41292800-41293400,41293522-41293649,41293759-41294019,
41294154-41294416,41294507-41294831
Length = 525
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 103 YISTTKSATSVCLLSKLDVIHSTNMKRTLSTLW--IHSK*NLVCP 231
YIS+T T V L LD +H++ +K LW H NL+ P
Sbjct: 341 YISSTLFYTDVTYLEFLDRVHTSELKLRAQGLWEVPHPWLNLLIP 385
>08_01_0064 +
444888-444959,445073-445277,445736-445901,446029-446251,
446982-447058,447370-447557,447845-447942,448202-448335,
448421-448555,448832-448960,449263-449632,449897-450018,
450155-450274,450396-450626,450706-450894,450978-451089,
451193-451438
Length = 938
Score = 27.9 bits (59), Expect = 2.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 33 AGHTSKYPYPILYDTDLKLKSSKLHFDD-KERYERMPFVKTGCDTFDKYEKNVI 191
AG S P I+ D +++KLHFDD +RY + TF+K + ++
Sbjct: 300 AGRLSPKPDIIVQRYDPTYEATKLHFDDVAQRYGHPIIILNLTKTFEKRPREMM 353
>11_08_0023 +
27741775-27742475,27744163-27744413,27744557-27744715,
27744976-27745409,27745537-27746076
Length = 694
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 260 QKRLFTQNNIGQT-KFYFECIHKVDNVLFIFVECITSSFDKRHTL 129
+++++ Q+ + T Y C+ +D + + V C+ + DKR T+
Sbjct: 631 RRKMYDQDMLSSTDSLYPYCMECLDRMAAVAVRCLKNKVDKRPTM 675
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 27 YLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNV 188
Y+ T+ + +DT +KL+S + +DD +++ P V +G F++ NV
Sbjct: 588 YITPETTIKTFIEQFDTAMKLRSDREAYDDFRSFQQRPQVLSGL-LFEEQFANV 640
>04_03_0623 -
18109311-18109853,18109900-18110495,18111292-18111493,
18111616-18111814,18112091-18112191
Length = 546
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -1
Query: 262 SRSDFSLKTILDKPSFILSVSIKSITFFSYLSNVSHPVL 146
S++D S++T+ L V+ +S FSYL ++ HP+L
Sbjct: 329 SQNDPSIRTL----EIRLKVAAESAEAFSYLHSLDHPIL 363
>04_03_0618 -
18071612-18072795,18073007-18073072,18074101-18074175,
18074234-18074963
Length = 684
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -1
Query: 262 SRSDFSLKTILDKPSFILSVSIKSITFFSYLSNVSHPVL 146
S++D S++T+ L V+ +S FSYL ++ HP+L
Sbjct: 452 SQNDPSIRTL----EIRLKVAAESAEAFSYLHSLDHPIL 486
>04_01_0367 + 4834602-4835489,4836117-4836644
Length = 471
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -3
Query: 299 ENVFNSTGAEWKIQKRLFTQNNIG---QTKFYFECIHKVDNVL-FIFVECITSSFDKRH 135
+N STG +WK +R+ + + + + + + D+++ +I+ C + D RH
Sbjct: 113 KNTVGSTGDQWKKMRRMLASEILSSAMERRMLGQRVEEADHLVNYIYRNCNNGTVDIRH 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,954,363
Number of Sequences: 37544
Number of extensions: 153191
Number of successful extensions: 387
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -