Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I08
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 201 3e-52
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 198 2e-51
07_03_0771 - 21381276-21381461,21381583-21381733,21381823-213820... 28 4.8
04_04_0157 + 23165638-23166633 28 4.8
04_04_0907 + 29304830-29305030,29305296-29305547 28 6.3
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060... 27 8.3
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 27 8.3
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 201 bits (491), Expect = 3e-52
Identities = 94/164 (57%), Positives = 115/164 (70%)
Frame = +2
Query: 50 ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKX 229
A G L+ +E+DV MLAA HLG +N +FQME YVYKRR DG ++INL +TWEK
Sbjct: 3 AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKL 62
Query: 230 XXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFRE 409
E+P D+ V S+R +GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F E
Sbjct: 63 QLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 122
Query: 410 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIP 541
PRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP
Sbjct: 123 PRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIP 166
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 198 bits (484), Expect = 2e-51
Identities = 95/162 (58%), Positives = 115/162 (70%), Gaps = 2/162 (1%)
Frame = +2
Query: 62 GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 235
GG ALS E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEK
Sbjct: 5 GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64
Query: 236 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 415
E+P D+ V S+R +GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPR
Sbjct: 65 AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124
Query: 416 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIP 541
LLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP
Sbjct: 125 LLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIP 166
>07_03_0771 -
21381276-21381461,21381583-21381733,21381823-21382060,
21382161-21382368,21382650-21382777,21382892-21383029,
21383160-21384012
Length = 633
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 490 YYWNVDI*SFSNWLMILSRVQNNQQPWFAECGLDLVSKCTRSETSSN 350
Y D+ SF ++ + Q N P+FAE DLVS R T N
Sbjct: 535 YSTKSDVFSFGILILEIVTGQRNSGPYFAEQNEDLVSLVWRHWTEGN 581
>04_04_0157 + 23165638-23166633
Length = 331
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 225 FSHVRRRLITCVPSPRRL 172
FSH+RRRL+ +P+P L
Sbjct: 5 FSHLRRRLLAAIPNPNLL 22
>04_04_0907 + 29304830-29305030,29305296-29305547
Length = 150
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 434 PAQDHQPITE-ASYVNIPVIALCNTDSPLRFVDIAIPCKT 550
P D + E A+ NIP+I L + D P +IA C+T
Sbjct: 23 PESDRPRLAEVATDSNIPLIDLASPDKPRVIAEIAQACRT 62
>11_06_0562 +
25003246-25003746,25004975-25005214,25005576-25006097,
25006184-25007248,25007350-25007656,25007761-25008001,
25008104-25008302,25008771-25008852,25008959-25009209,
25010061-25010219,25010220-25010603
Length = 1316
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 449 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCKTLKSSHVHRV 577
Q +T ++Y +I + C + S + FVDI + LKS+H +RV
Sbjct: 282 QNLTSSAYYDINNMLRCES-SGVFFVDINLKKIELKSTHSYRV 323
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 332 HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 505
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 506 DSPLR 520
+ P++
Sbjct: 330 EQPMQ 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,021,889
Number of Sequences: 37544
Number of extensions: 319797
Number of successful extensions: 715
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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