Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I07
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0048 - 10058385-10058639                                         29   2.5  
10_08_0862 - 21143540-21143968                                         28   5.9  
10_08_0020 - 14196770-14197174,14198856-14198933                       28   5.9  
02_05_0563 + 29998291-29998753,29999256-29999468,29999550-299996...    28   5.9  
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239...    27   7.7  

>10_06_0048 - 10058385-10058639
          Length = 84

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = -3

Query: 247 VL*FICVEHGSTPRCPS-----GTPSMSPQKGYPGTYLERGYS*TVLRELKYKVNQINCS 83
           +L F  V HG TP CP       TP   P + + G + E G       +L+  +N +N  
Sbjct: 14  LLLFAVVAHGCTPNCPGEQAVPATPVAVPVQSHHGQHDEHGRCPINALKLRVCINVLN-G 72

Query: 82  M*SLKLK 62
           +  +K+K
Sbjct: 73  LVDMKIK 79


>10_08_0862 - 21143540-21143968
          Length = 142

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 247 VL*FICVEHGSTPRCPSGTPSMSP 176
           +L F    HG  P CP G P + P
Sbjct: 14  ILLFAAAAHGCAPYCPGGAPPVIP 37


>10_08_0020 - 14196770-14197174,14198856-14198933
          Length = 160

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 232 CVEHGSTPRCPSGTPSMSPQKGYPGTYLERGYS*TVLRELKYK 104
           C   GS P  P   P  +   GY  T++  GYS T L  +KY+
Sbjct: 28  CSWFGSNPVKPLNQPRPNRSAGY--TWVGLGYSKTRLNRIKYR 68


>02_05_0563 +
           29998291-29998753,29999256-29999468,29999550-29999667,
           30000227-30000355,30000438-30000810,30000890-30001147,
           30001192-30001227
          Length = 529

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -1

Query: 297 SMGLVVISVLLPRSHEESSSLFVLSMAVLRAVQAELHQCRHRRDIQVLIWNADILKRFFG 118
           S+G+V   +L+P   E    L  LS  + R  Q E  Q     D+   +   D+L  + G
Sbjct: 437 SIGMVYFELLMPAKRERKRKLNKLSETIRRKKQ-EYDQLDIEFDLDSALEGTDVLTDWKG 495

Query: 117 NSNI 106
           + N+
Sbjct: 496 DYNL 499


>02_01_0336 +
           2397648-2397812,2398367-2398441,2398860-2398975,
           2399155-2399269,2399360-2399488,2399809-2399856,
           2400369-2400448,2400628-2400824,2400916-2401202,
           2401281-2401307,2401353-2401538,2401633-2402094,
           2402201-2402350,2402612-2402687,2402851-2402978,
           2403244-2403435,2403559-2403690,2403767-2403889,
           2404128-2404346,2404518-2404679
          Length = 1022

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -1

Query: 282 VISVLLPRSHEESSSLFVLSMA-VLRAVQAELHQCRHRRDIQVLIWN 145
           VI+ L  +S  E+S+  + +++ ++R ++  LH     RD++V+ WN
Sbjct: 341 VIASLAEQSRAEASAATIGAISDLIRHMKKTLHVALGSRDLEVIKWN 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,360,936
Number of Sequences: 37544
Number of extensions: 304786
Number of successful extensions: 730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)