Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I07
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098996-3|AAC68707.2|  349|Caenorhabditis elegans Serpentine re...    29   1.7  
Z54237-5|CAN86900.1|  273|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z54237-4|CAN86899.1|  297|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.      27   7.0  

>AF098996-3|AAC68707.2|  349|Caenorhabditis elegans Serpentine
           receptor, class w protein79 protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = -2

Query: 317 YKSALPAAWV*LLYQSSFLVLTKSPLVYLC*AWQYSALSKRNSINVATEGISRYLSGTRI 138
           Y S L   W+   Y S FL +      Y+  AW    L  R+ I  A+  +   L+ TR 
Sbjct: 66  YLSILAELWIRNAYFSDFLCINVGSYAYIVSAWILECL--RDLIEKASFWLGFMLAMTRY 123

Query: 137 FLNGSSG 117
            +  SSG
Sbjct: 124 IIMKSSG 130


>Z54237-5|CAN86900.1|  273|Caenorhabditis elegans Hypothetical
           protein T11B7.3b protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 217 STPRCPSGTPSMSPQKGYPGTYLERG 140
           S P+CP G P      G PGT  E G
Sbjct: 92  SAPQCPPGPPGPQGAPGAPGTPGENG 117


>Z54237-4|CAN86899.1|  297|Caenorhabditis elegans Hypothetical
           protein T11B7.3a protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 217 STPRCPSGTPSMSPQKGYPGTYLERG 140
           S P+CP G P      G PGT  E G
Sbjct: 92  SAPQCPPGPPGPQGAPGAPGTPGENG 117


>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical protein
            F26A3.8 protein.
          Length = 1601

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 385  GGISPILVCKQCDTNLWFYP*INCRFHSTFCTFVYCPTN 501
            G I P+   K+ D  + F+  + CR      T  +CP N
Sbjct: 1412 GNIDPLTEKKRSDMMVKFFQFMGCRKFRKMSTLSFCPLN 1450


>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
          Length = 1601

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 385  GGISPILVCKQCDTNLWFYP*INCRFHSTFCTFVYCPTN 501
            G I P+   K+ D  + F+  + CR      T  +CP N
Sbjct: 1412 GNIDPLTEKKRSDMMVKFFQFMGCRKFRKMSTLSFCPLN 1450


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,285,211
Number of Sequences: 27780
Number of extensions: 277024
Number of successful extensions: 819
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)