Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I07
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   2.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   3.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.4  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -1

Query: 252 EESSSLFVLSMAVLRAVQ 199
           EES ++F+L+  ++R++Q
Sbjct: 199 EESKTVFILNNEIIRSIQ 216


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 291 GLVVISVLLPRSHEESSSLFVLSMAV 214
           G+VV   L  +S    S+LFV+++A+
Sbjct: 71  GMVVYIFLSTKSLRTPSNLFVINLAI 96


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 291 GLVVISVLLPRSHEESSSLFVLSMAV 214
           G+VV   L  +S    S+LFV+++A+
Sbjct: 37  GMVVYIFLSTKSLRTPSNLFVINLAI 62


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 92  YLINFIFEFPKNRLRISAFQISTWI 166
           + +N +  + K  +   AFQ+ TW+
Sbjct: 289 FCVNIVTSYCKTCISGRAFQVLTWL 313


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 558 VQLYHRNNPHGCRCQPVQRI 499
           V+L   +NP  CRC+ +Q +
Sbjct: 917 VELSLGSNPWSCRCKFLQEL 936


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -1

Query: 531 HGCRCQPVQRIRRTINKSTECGMKTTINLRIKP 433
           HG RC+ + R+ R +  S+   ++   +  + P
Sbjct: 205 HGYRCRTMHRLTRQVVVSSVANVRIADHRGVMP 237


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -1

Query: 531 HGCRCQPVQRIRRTINKSTECGMKTTINLRIKP 433
           HG RC+ + R+ R +  S+   ++   +  + P
Sbjct: 205 HGYRCRTMHRLTRQVVVSSVANVRIADHRGVMP 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,491
Number of Sequences: 438
Number of extensions: 3203
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)