Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I05
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    27   1.4  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   4.3  
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    25   5.6  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    24   9.8  

>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 26/88 (29%), Positives = 37/88 (42%)
 Frame = -3

Query: 347 SRSDLTESTSKIICLNHNSYA*CVTIKRCSSCTGLDDSALSILCADKSLSSIRYSPYSIP 168
           SR  +T    KI    H  +  C+T   C+  T  DD+ L+ L        ++Y P  I 
Sbjct: 71  SRLKITSVDRKIRLQIHQLHLLCLTYHLCTRNTWCDDNRLNYL--------VKYIPPGIR 122

Query: 167 ASLPRCSPSWPIDSSITDLIGQAILYEI 84
            SL   S    +  + T L G A L E+
Sbjct: 123 VSLHPSSQKSQMIRNKTFLHGLAGLVEV 150


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 218 CADKSLSSIRYSPYSIPASLPRCSPSW 138
           C+D  +  +  SP S   SL  C+P W
Sbjct: 342 CSDTLVYDVSVSPMSFFGSLIACAPMW 368


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -3

Query: 329 ESTSKIICLNHNSYA*CVTIKRCSSCTGLDDSALSILCADKSLSSIRYSPYSIPASL 159
           ES   +I LN  ++   + I R +      D ALS        S++R +PYSIPA L
Sbjct: 324 ESVRHLISLNEETW---IQIGRLAELFDDQDKALSAY-----ESALRQNPYSIPAML 372


>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 184 EYLMLDKLLSAQRMLSAESSKPVHDEHL 267
           +YL+LD +  A   L A +S  +  EHL
Sbjct: 268 QYLLLDPIRGAMTSLYAATSPEISKEHL 295


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 109 MRSVIDESMGQEGEHLGNEAGMLY 180
           MR VI   +GQ G  +GN    LY
Sbjct: 1   MREVISVHVGQAGVQIGNACWELY 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,751
Number of Sequences: 5004
Number of extensions: 32216
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)