Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I05
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0595 - 34955345-34955464,34955495-34956256,34956384-349565... 31 0.34
09_02_0094 + 4196729-4197571 29 1.8
02_01_0281 - 1879519-1879605,1880761-1880851,1881343-1881849,188... 28 3.2
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498... 28 4.2
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 27 5.6
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681... 27 7.3
09_04_0484 + 17990020-17990488,17990930-17991009,17991122-179915... 27 7.3
02_01_0373 + 2673483-2673506,2673952-2674134 27 7.3
08_02_0472 - 17573865-17574034,17575145-17575229,17575339-175754... 27 9.7
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504... 27 9.7
03_06_0355 + 33340219-33340322,33340408-33340549,33340657-333407... 27 9.7
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270... 27 9.7
>03_06_0595 -
34955345-34955464,34955495-34956256,34956384-34956507,
34957111-34957167,34958222-34958366,34958860-34958909,
34959366-34959514,34959955-34960146
Length = 532
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/70 (22%), Positives = 36/70 (51%)
Frame = -3
Query: 350 TSRSDLTESTSKIICLNHNSYA*CVTIKRCSSCTGLDDSALSILCADKSLSSIRYSPYSI 171
++ L + TS I+ L++ Y + + ++C G S + ++KS+ + S ++
Sbjct: 211 SNEDTLKQPTSSIMLLDNAKYDFLSALLKGAACVGATMDEASAVQSNKSVGMVHSSTHAS 270
Query: 170 PASLPRCSPS 141
P ++P SP+
Sbjct: 271 PHAIPPQSPA 280
>09_02_0094 + 4196729-4197571
Length = 280
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 223 MLSAESSKPVHDEHLFIVTHQAYELWFKQIIFEVDSVRSLLDVEGLDESH 372
ML E+ KP HD+ + + ++ W K + F + + S E +D SH
Sbjct: 6 MLVKENFKPRHDDVILVTHPKSSTTWLKALAFAIVNRSSF---ESIDASH 52
>02_01_0281 -
1879519-1879605,1880761-1880851,1881343-1881849,
1881939-1882009,1882102-1882181,1882287-1882464
Length = 337
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 375 DGNFDKAKPNRAYTKVTGRTSNDTRNH 455
D + + +P ++YT G T +D RNH
Sbjct: 255 DSDLNLLRPRQSYTMKAGNTLDDVRNH 281
>07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,
4983499-4983549,4983659-4983741,4983818-4983917,
4984410-4984488,4984957-4985080,4985605-4985711,
4985810-4985938,4987004-4987089,4987200-4987367,
4987477-4987637,4987721-4987752,4987866-4988047,
4988386-4988465,4988885-4988950,4989060-4989349,
4990433-4990540,4991521-4991618,4991680-4991782,
4992269-4992345,4992449-4992520,4992579-4992670,
4992909-4992989,4993290-4993392,4994334-4994492,
4994696-4995085
Length = 1213
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 366 ESHDGNFDKAKPNRAYTKVTGRTSNDTRNH 455
++H GN DKA PN Y + D + H
Sbjct: 912 DNHPGNLDKASPNAGYVLLMFYNLYDGKKH 941
>08_01_0609 +
5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = +1
Query: 118 VIDESMGQEG----EHLGN-EAGMLYGEYLMLDKLLSAQRMLSAESSKPVHDEHLFIVTH 282
V+DES EG + N +G YG+ ++D+ + +S + + + H
Sbjct: 360 VVDESWADEGIFEVDFFTNASSGAEYGKVDVVDEAKTDDFTFEIDSLEKDSNNKMHGKAH 419
Query: 283 QAYELWFKQIIFEVD 327
E W + IFEVD
Sbjct: 420 MVDEAWDDEAIFEVD 434
>11_04_0376 -
16965504-16966101,16966212-16966416,16967175-16968197,
16968241-16968892,16969025-16969387,16970095-16970451
Length = 1065
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 266 RCSSCTGLDDSALSILCADKSLSSIRYSPYSIPASLP 156
R S C+GL+D+A I+ + I+ P+ + S P
Sbjct: 789 RLSECSGLEDAAKDIVRMKIGMMDIKQFPFRLILSTP 825
>09_04_0484 +
17990020-17990488,17990930-17991009,17991122-17991586,
17994670-17994756,17994887-17995018,17995102-17995293,
17995409-17995495,17995621-17996295
Length = 728
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 113 LIGQAILYEINFYLIFTTQKKIRVKI*RARLHSRPP 6
LIG +LY + F++I +K++ + R R S P
Sbjct: 681 LIGMVVLYRVLFFVIVKLIEKMKPMVQRLRFRSDMP 716
>02_01_0373 + 2673483-2673506,2673952-2674134
Length = 68
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 223 MLSAESSKPVHDEHLFIVTHQAYELWFKQIIFEVDSVRSLLDVEGLDESHTMEILTRLNR 402
ML+AE P +LF++ Q Y W ++F L+DV ++ + E +TR R
Sbjct: 10 MLAAEV--PAGGRYLFLLVDQTYCRWMWMVMF---GAGLLVDVNNENDINERETMTREKR 64
>08_02_0472 -
17573865-17574034,17575145-17575229,17575339-17575461,
17575566-17575707,17575789-17575889
Length = 206
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +1
Query: 202 KLLSAQRMLSAESSKPVHDEHLFIVTHQAYELWFKQIIFEVDSVRSLLDVEGLDESHTME 381
++L+ L E+ H L+ + W++ I S+ S + +D+ H++E
Sbjct: 39 RVLTVGDELMGETMLLRHGSRLYRLDGTRSSAWYEVKISYPASIPSSFSIRLVDDPHSVE 98
Query: 382 ILTRLNRIVL 411
L +NR +L
Sbjct: 99 YLGSMNRRLL 108
>06_01_0692 -
5047162-5047441,5047602-5047726,5048257-5048327,
5048453-5048834,5049389-5050126
Length = 531
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 316 FEVDSVRSLLDVEGLDESHTMEILTRL 396
F +S+ L G D +HT+EILT+L
Sbjct: 219 FSSESLAELYYANGCDFNHTIEILTQL 245
>03_06_0355 +
33340219-33340322,33340408-33340549,33340657-33340779,
33340875-33340959,33342578-33342747
Length = 207
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +1
Query: 202 KLLSAQRMLSAESSKPVHDEHLFIVTHQAYELWFKQIIFEVDSVRSLLDVEGLDESHTME 381
++L+ L E+ H L+ + W++ I S+ S + +D+ H++E
Sbjct: 40 RVLTVGEELMGETMPLRHGSRLYRLDGTRPSAWYEVKISYPASIPSSFSIRLVDDPHSVE 99
Query: 382 ILTRLNRIVL 411
L +NR +L
Sbjct: 100 DLGSMNRRLL 109
>02_04_0130 +
20025414-20025531,20026357-20026585,20026909-20027032,
20027441-20027497,20027613-20027804,20027882-20027959,
20028437-20028619,20028715-20028795,20029196-20029228,
20029448-20029513,20029591-20029683,20030106-20030231,
20030395-20030508,20030973-20031068,20031159-20031256,
20031416-20031831,20032025-20032473,20032810-20032905
Length = 882
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 154 LGNEAGMLYGEYLMLDKLLSAQRMLSAESSKPVHDEHLFIVTHQ 285
+G +AG+ + D+L +++ + PVH E LF+ H+
Sbjct: 443 MGKDAGLHTSGHAYHDELEEVLQIVKPQHFLPVHGELLFLKEHE 486
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,915,710
Number of Sequences: 37544
Number of extensions: 190253
Number of successful extensions: 486
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -