Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I05
(463 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U20861-14|AAN63440.1| 245|Caenorhabditis elegans Hypothetical p... 116 6e-27
U20861-12|AAA62299.1| 403|Caenorhabditis elegans Hypothetical p... 116 6e-27
Z98866-21|CAD56612.1| 743|Caenorhabditis elegans Hypothetical p... 29 1.2
Z98866-20|CAB11567.1| 734|Caenorhabditis elegans Hypothetical p... 29 1.2
Z66514-1|CAA91341.3| 198|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF040653-6|AAB95032.1| 508|Caenorhabditis elegans F-box b prote... 28 3.7
Z70310-10|CAA94371.2| 341|Caenorhabditis elegans Hypothetical p... 27 6.5
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 6.5
AL023841-13|CAA19513.2| 341|Caenorhabditis elegans Hypothetical... 27 6.5
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 6.5
AF040655-10|AAB95045.1| 195|Caenorhabditis elegans Hypothetical... 27 6.5
Z81595-4|CAB04751.1| 91|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U20861-14|AAN63440.1| 245|Caenorhabditis elegans Hypothetical
protein C28H8.11b protein.
Length = 245
Score = 116 bits (280), Expect = 6e-27
Identities = 54/98 (55%), Positives = 75/98 (76%)
Frame = +1
Query: 169 GMLYGEYLMLDKLLSAQRMLSAESSKPVHDEHLFIVTHQAYELWFKQIIFEVDSVRSLLD 348
G Y EYL LDK+L+AQR+ S + V DEHLFIV HQA+ELWFKQIIF++D+VR LL+
Sbjct: 36 GQTYSEYLQLDKILTAQRLKSEADGQRVDDEHLFIVIHQAHELWFKQIIFDLDNVRKLLN 95
Query: 349 VEGLDESHTMEILTRLNRIVLILKLLVEQVMILETMTP 462
+DE+ T++I++ L+R+ IL LL EQ+ +L+TM+P
Sbjct: 96 NTIVDETKTLKIVSGLDRMTKILSLLTEQITLLDTMSP 133
>U20861-12|AAA62299.1| 403|Caenorhabditis elegans Hypothetical
protein C28H8.11a protein.
Length = 403
Score = 116 bits (280), Expect = 6e-27
Identities = 54/98 (55%), Positives = 75/98 (76%)
Frame = +1
Query: 169 GMLYGEYLMLDKLLSAQRMLSAESSKPVHDEHLFIVTHQAYELWFKQIIFEVDSVRSLLD 348
G Y EYL LDK+L+AQR+ S + V DEHLFIV HQA+ELWFKQIIF++D+VR LL+
Sbjct: 36 GQTYSEYLQLDKILTAQRLKSEADGQRVDDEHLFIVIHQAHELWFKQIIFDLDNVRKLLN 95
Query: 349 VEGLDESHTMEILTRLNRIVLILKLLVEQVMILETMTP 462
+DE+ T++I++ L+R+ IL LL EQ+ +L+TM+P
Sbjct: 96 NTIVDETKTLKIVSGLDRMTKILSLLTEQITLLDTMSP 133
>Z98866-21|CAD56612.1| 743|Caenorhabditis elegans Hypothetical
protein Y49E10.23b protein.
Length = 743
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 121 IDESMGQEGEHLGNEAGMLYGEYLMLDKLLSAQRMLSAESSK 246
+ + G+E + + NE L + +M+DK++ QR L+ + K
Sbjct: 567 VSSAAGEEAKRIENEEQKLNMQQIMIDKIVILQRKLARRTEK 608
>Z98866-20|CAB11567.1| 734|Caenorhabditis elegans Hypothetical
protein Y49E10.23a protein.
Length = 734
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 121 IDESMGQEGEHLGNEAGMLYGEYLMLDKLLSAQRMLSAESSK 246
+ + G+E + + NE L + +M+DK++ QR L+ + K
Sbjct: 567 VSSAAGEEAKRIENEEQKLNMQQIMIDKIVILQRKLARRTEK 608
>Z66514-1|CAA91341.3| 198|Caenorhabditis elegans Hypothetical
protein K01A11.1 protein.
Length = 198
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 209 KSLSSIRYSPYSIPASLPRCSPSWPID 129
+S+ SI + P++IP + C WP+D
Sbjct: 165 RSVGSIHWHPFTIPDAPISCQCMWPVD 191
>AF040653-6|AAB95032.1| 508|Caenorhabditis elegans F-box b protein
protein 51 protein.
Length = 508
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -3
Query: 257 SCTGLDDSALSILCADKSLSSIRYSPYSIPASLPRCSPSWPIDSSITDLIGQAILYEI 84
S TG+ L I CA++ LSS + +P P+ SS + QA+L I
Sbjct: 425 SLTGMKIVHLCIQCANQMLSSAEFMNAFLPTDWLTLQDRQPLTSSQLMTLSQAMLQNI 482
>Z70310-10|CAA94371.2| 341|Caenorhabditis elegans Hypothetical
protein Y43C5B.3 protein.
Length = 341
Score = 27.1 bits (57), Expect = 6.5
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 190 LMLDKLLSAQRMLSAESSKPVHDEHLFIV--THQAYELWFKQIIFEVDSVRSLL 345
L + ++L A R A KP H E L +V H +L++ +F S+R+ L
Sbjct: 5 LEMPQMLPAPRDCYAVPGKPGHSEPLTVVGWEHMDLKLFYPSALFSSWSIRTAL 58
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 406 RFGLALSKFPSCDSRQDLQRRGVTSRSPPRRLS 308
+FGL S SR++L+R R+PPR LS
Sbjct: 291 QFGLLQGFQKSLSSRKELERWSNIRRAPPRTLS 323
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 406 RFGLALSKFPSCDSRQDLQRRGVTSRSPPRRLS 308
+FGL S SR++L+R R+PPR LS
Sbjct: 291 QFGLLQGFQKSLSSRKELERWSNIRRAPPRTLS 323
>AL023841-13|CAA19513.2| 341|Caenorhabditis elegans Hypothetical
protein Y43C5B.3 protein.
Length = 341
Score = 27.1 bits (57), Expect = 6.5
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 190 LMLDKLLSAQRMLSAESSKPVHDEHLFIV--THQAYELWFKQIIFEVDSVRSLL 345
L + ++L A R A KP H E L +V H +L++ +F S+R+ L
Sbjct: 5 LEMPQMLPAPRDCYAVPGKPGHSEPLTVVGWEHMDLKLFYPSALFSSWSIRTAL 58
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 406 RFGLALSKFPSCDSRQDLQRRGVTSRSPPRRLS 308
+FGL S SR++L+R R+PPR LS
Sbjct: 291 QFGLLQGFQKSLSSRKELERWSNIRRAPPRTLS 323
>AF040655-10|AAB95045.1| 195|Caenorhabditis elegans Hypothetical
protein T24E12.11 protein.
Length = 195
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 182 PYSIPASLPRCSPSWPIDSSITDLIGQAILY 90
PYSIP +L SP + ++S + L G + LY
Sbjct: 39 PYSIPEALFNMSPDYGLNSGLPSL-GSSALY 68
>Z81595-4|CAB04751.1| 91|Caenorhabditis elegans Hypothetical
protein T22H2.4 protein.
Length = 91
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -3
Query: 269 KRCSSCTGLDDSALSILCADKSLSSIRYSPYSIPASLPRCSPSWPIDSS 123
K+C C G + C KS S +P +P SL CS PI+ S
Sbjct: 32 KKCKKC-GKMCKKCAKKCLKKSKFSDPRNPKMLPTSLLVCSTGIPIECS 79
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,600,947
Number of Sequences: 27780
Number of extensions: 177604
Number of successful extensions: 513
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -