Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I04
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 164 1e-41
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 113 3e-26
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 30 0.25
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 29 0.43
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 28 1.3
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 5.3
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 25 7.0
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 7.0
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 164 bits (398), Expect = 1e-41
Identities = 87/205 (42%), Positives = 126/205 (61%), Gaps = 2/205 (0%)
Frame = +1
Query: 28 RMAQALKKLTTQVLKNNNIDYFVGCTALRASSTW--WSNVPMGPPDVILGITEAYKKDTH 201
R + L T LK N + V C A ++ + W++VPMGPPD I GITEAYKKD
Sbjct: 4 RNLRCLHPNTFASLKTNVSYHGVKCLASQSKRGFKVWADVPMGPPDPIFGITEAYKKDGD 63
Query: 202 PNKVNLGVGAYRDDEGKPFVLPSVRKAEEILHKKGLNHEYAPISGEPQHYYLHAVAKLAF 381
K+NLG G YRDD GKP+VLPSVR+AE L + L+ EYAPI+G P + KLA+
Sbjct: 64 VKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQKLDKEYAPITGIPS--FRVQATKLAY 121
Query: 382 GEDSQVIQNKSNCTVQTLSGTGALRLGLEFITNHYAKAKEIWMPTPTWGNHPQICNMLKL 561
G+ + I+++ + Q++SGTGAL + F+ + Y +K I++ PTWGNH + + L
Sbjct: 122 GDVYESIKDRL-VSAQSISGTGALCIAANFLASFY-PSKTIYVSDPTWGNHKNVFSRAGL 179
Query: 562 PHKKYRYFEPKTNGFELQWALEDIS 636
K Y+Y++P T G +++ L D++
Sbjct: 180 TVKSYKYYDPATRGLDIKGMLSDLT 204
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 113 bits (271), Expect = 3e-26
Identities = 58/171 (33%), Positives = 93/171 (54%), Gaps = 3/171 (1%)
Frame = +1
Query: 130 WSNVPMGPPDVILGITEAYKKDTHPNKVNLGVGAYRDDEGKPFVLPSVRKAEEILHKK-G 306
++N+ D I + Y +D P KVN+ VGAYRDD GKP++LP+V+KA +I+ ++
Sbjct: 6 FANIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQAS 65
Query: 307 LNHEYAPISGEPQHYYLHAVAKLAFGEDSQVIQNKSNCTVQTLSGTGALRLGLEFITNHY 486
NHEY PI+G P+ + A A++ F + ++ ++Q++SGTGA L FI Y
Sbjct: 66 FNHEYLPIAGLPR--FTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFY 123
Query: 487 AK--AKEIWMPTPTWGNHPQICNMLKLPHKKYRYFEPKTNGFELQWALEDI 633
K +++ PTW H + L + Y Y++ K F+ + L I
Sbjct: 124 VKHTGAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTI 174
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 30.3 bits (65), Expect = 0.25
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 261 DKWFPFIISVCSNTKVDLVGMCVFLVSFSDTQDHI 157
+ W +S CS+ K+D + + + FS+ QD+I
Sbjct: 410 EDWLSEFMSACSDCKIDFIACHWYGIDFSNLQDYI 444
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 29.5 bits (63), Expect = 0.43
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 255 WFPFIISVCSNTKVDLVGMCVFLVSFSDTQDHIWWA 148
WF + +C + + G+ VFL++ HIWWA
Sbjct: 373 WFSWANDICRDNDQER-GVVVFLMNMCQNIWHIWWA 407
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +1
Query: 136 NVPMGPPDVILGITEAYKKDTHPNKVNLGVGAYR---DDEG--KPFVLPSVRKAEEILHK 300
+ P+ P DV LG +D+ N+VNL + G KP+ L S R + +
Sbjct: 255 STPLSPEDVDLGTYTVKNRDSWSNEVNLSASTNNLSTNTSGTLKPYSLSSSRSSS---YS 311
Query: 301 KGLN 312
KG+N
Sbjct: 312 KGVN 315
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -3
Query: 234 VCSNTKVDLVGMCVFLVSFSDTQDHIWWAHRHI 136
VC V C+FL SF + +++ W +H+
Sbjct: 47 VCDPKLQVAVRECLFLFSFQNDNEYLVWFKKHL 79
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -3
Query: 258 KWFPFIISVCSNTKVDLVGMCVFLVSFSDTQDHIWWAHRH 139
K+ P++ V +T+ ++ F +++ Q+ +W H H
Sbjct: 92 KFTPYMDGVPQSTQCEIPPGATFYYNYTALQNGTYWVHSH 131
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 7.0
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = +1
Query: 202 PNKVNLGVGAYRDDEGKPFVLPSVRK--AEEILHKKG--LNHEYAPISGEPQHYYLHAVA 369
P VNL + +D+G+P P VR L+ +G LNH Y S + H
Sbjct: 106 PQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNH-YNNGSHQVLHPQFQNGT 164
Query: 370 KLAFGEDSQVIQNKSNCT 423
+ S ++QN N T
Sbjct: 165 NAPYVVQSNLMQNNVNLT 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,946
Number of Sequences: 5004
Number of extensions: 60767
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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