Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I04
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934... 164 6e-41
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 146 1e-35
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770... 57 1e-08
07_03_0759 - 21299502-21299807,21299889-21300039,21300151-213003... 29 3.1
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783 29 4.1
07_03_0762 + 21324550-21325414,21325606-21325746,21325993-213261... 28 7.2
06_02_0148 - 12280794-12280962,12281102-12281210,12281283-122813... 28 7.2
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557... 28 7.2
>01_06_0786 -
31992357-31992441,31992632-31992752,31993371-31993465,
31993595-31993716,31994217-31994354,31994564-31994727,
31994835-31994955,31995049-31995148,31995329-31995412,
31996082-31996143,31996246-31996317,31996447-31996506
Length = 407
Score = 164 bits (398), Expect = 6e-41
Identities = 85/174 (48%), Positives = 111/174 (63%), Gaps = 1/174 (0%)
Frame = +1
Query: 115 ASSTWWSNVPMGPPDVILGITEAYKKDTHPNKVNLGVGAYRDDEGKPFVLPSVRKAEEIL 294
ASS+ ++ + P D ILG+T AY KD P KVNLGVGAYR +EGKP VL VR+AE++L
Sbjct: 2 ASSSVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQML 61
Query: 295 -HKKGLNHEYAPISGEPQHYYLHAVAKLAFGEDSQVIQNKSNCTVQTLSGTGALRLGLEF 471
+ EY PI+G L AKL FG DS IQ TVQ LSGTG+LR+G EF
Sbjct: 62 INNPSRVKEYLPITGLADFNKLS--AKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEF 119
Query: 472 ITNHYAKAKEIWMPTPTWGNHPQICNMLKLPHKKYRYFEPKTNGFELQWALEDI 633
+ HY + + I++P PTWGNHP++ + L + YRY++P T G + Q LED+
Sbjct: 120 LARHYHE-RTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDL 172
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 146 bits (354), Expect = 1e-35
Identities = 73/180 (40%), Positives = 108/180 (60%)
Frame = +1
Query: 94 VGCTALRASSTWWSNVPMGPPDVILGITEAYKKDTHPNKVNLGVGAYRDDEGKPFVLPSV 273
+G A R+ ++W+ +V D ILG+TEA+ D P+KVN+GVGAYRDD GKP VL V
Sbjct: 21 MGAVAARSMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECV 80
Query: 274 RKAEEILHKKGLNHEYAPISGEPQHYYLHAVAKLAFGEDSQVIQNKSNCTVQTLSGTGAL 453
R+AE + +N EY P+ G + + KLA+GE+ + I++K VQ LSGTGA
Sbjct: 81 REAERRI-AGSMNMEYLPMGGSIK--MIEESLKLAYGENCEFIKDKRIAAVQALSGTGAC 137
Query: 454 RLGLEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPHKKYRYFEPKTNGFELQWALEDI 633
RL +F + +I++PTPTW NH I ++P K + Y+ P++ G + ++DI
Sbjct: 138 RLFADF-QKRFLPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDI 196
>02_02_0198 +
7705868-7706065,7706955-7707052,7707269-7707374,
7707636-7707740,7707823-7707995,7708435-7708594,
7708683-7708778,7709349-7709417,7709434-7709528,
7709615-7709687
Length = 390
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +1
Query: 433 LSGTGALRLGLEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPHKKYRYFEPKTNGFEL 612
LSGTGA RL +F + +I++PTPTW NH I ++P + + Y+ P++ G +
Sbjct: 68 LSGTGACRLFADF-QRRFLPNSQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDF 126
Query: 613 QWALEDI 633
++DI
Sbjct: 127 AGLMDDI 133
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +1
Query: 106 ALRASSTWWSNVPMGPPDVILGITEAYKKDTHPNKVNLGV 225
A RA ++ + +V D ILG+TEA+ D P+KVN+GV
Sbjct: 27 ATRAMASLFGHVEPASKDPILGVTEAFLADPSPDKVNVGV 66
>07_03_0759 -
21299502-21299807,21299889-21300039,21300151-21300388,
21300729-21300939,21301018-21301133,21301388-21301519,
21302179-21303073
Length = 682
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 463 LEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPH 567
L + H+ + + + P+ GNHP I MLK H
Sbjct: 579 LNHVWGHWTRGNVVELIDPSLGNHPPIEQMLKCIH 613
>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
Length = 1439
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1
Query: 370 KLAFGEDSQVIQNKSN-----CTVQTLSGTGALRLGLEFITNHYA 489
KLA G + ++N +N C + GTG RL + F+ +++A
Sbjct: 896 KLAGGTSIEQLRNNANTIEGGCVISHAPGTGKTRLAITFVQSYFA 940
>07_03_0762 +
21324550-21325414,21325606-21325746,21325993-21326177,
21326200-21326410,21326526-21326769,21326853-21327003,
21327089-21327439
Length = 715
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 463 LEFITNHYAKAKEIWMPTPTWGNHPQICNMLKLPH 567
L + H+ + + + P+ G+HP I MLK H
Sbjct: 597 LNLVWEHWTRGNVVELIDPSMGDHPPIEQMLKCIH 631
>06_02_0148 -
12280794-12280962,12281102-12281210,12281283-12281385,
12281587-12281618,12281709-12281926,12282035-12282150,
12282428-12282683,12282912-12282999,12283393-12283468,
12283562-12283620,12285236-12285305,12285399-12285539
Length = 478
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 157 DVILGITEAYKKDTHPNKVNLGVGAYRDDEGKPFVLPSVRKAEEILH 297
D+ + YK+D K LG+ AYR P +LPSV + H
Sbjct: 80 DIAIDSYHRYKEDVGIMK-GLGLNAYRFSVSWPRILPSVEPFVTLFH 125
>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
5579676-5579795,5581616-5581744,5581828-5581953,
5582945-5583000,5583084-5583183,5585155-5585272,
5585374-5585583,5585902-5586226,5587094-5587187,
5588021-5588129,5588246-5588514,5589153-5589280,
5589983-5590217,5590858-5591046,5591326-5591609,
5591698-5591890,5592040-5592207,5592429-5592514,
5594391-5594550
Length = 1412
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +1
Query: 88 YFVGCTALRASSTWWSNVPMGPPDVILGITEAYKKDTHPNKVNLGVGAYRDDEGKPFVLP 267
YF+G R W ++P PPD I+GI + +++NL V AY EG +
Sbjct: 950 YFMGPNTFR--EPW--HLPYSPPDAIIGIVYEDAFNRFIDEINL-VAAYEWWEGSIHSIL 1004
Query: 268 SV 273
SV
Sbjct: 1005 SV 1006
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,026,407
Number of Sequences: 37544
Number of extensions: 440336
Number of successful extensions: 1077
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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