Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I02
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   3.3  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    25   4.3  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    25   4.3  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   5.7  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.5  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    24   9.9  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    24   9.9  

>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 410 GTSNSGCFIAFLPGNHGKLHRLSVAYRTHSLARVVS 303
           GT N GC +   P     L RLS+     S+A  ++
Sbjct: 832 GTQNVGCLLRIEPNYEQNLIRLSIRSTNTSIANTLA 867


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 402 TGPGGESVKGSPYAAD 449
           TG GGES+ G P+A +
Sbjct: 71  TGMGGESIYGEPFAVE 86


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 225 NVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK 320
           N K  Y + + ++  E +F   T I+ NNP+K
Sbjct: 254 NDKENYNYPDFSNDNELLFSLATLIVENNPKK 285


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 326 HSLARVVSDYRSLMYKHIFFGVIPIDETISTLDVE 222
           H LA VV D + +    I  G + + + IS +D+E
Sbjct: 231 HDLAAVVDDDKDIAQSIINAGKVSMGQDISEIDLE 265


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +3

Query: 249 INRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEAARVTGPGGESVK 428
           +N  D    + +    +I+N+    +R +GD     F ++    GY  AR+T    E + 
Sbjct: 646 LNTLDVSPQLPIVMAYVIKNDDGGCIRYIGDVVDAIFGILDAYHGY--ARLT----EGLL 699

Query: 429 GSPYAADKRRS 461
           G  YA  K+ S
Sbjct: 700 GILYAIIKQES 710


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 256 LLMKPYPLLTLNHLTVPETFSAMTCFCLAGL 164
           LL + Y L   ++  +PE+  A  CF +  L
Sbjct: 53  LLQRAYALRACSNSLLPESIEARKCFLIESL 83


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 210 TVKWFNVKSGYG-FINRNDTKEDV 278
           T+KW N+ SG G F+ + +  ED+
Sbjct: 879 TIKWDNLNSGPGPFVPQTENVEDL 902


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,425
Number of Sequences: 5004
Number of extensions: 23976
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)