Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I02
(466 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 133 7e-32
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 88 3e-18
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 85 2e-17
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 85 2e-17
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 85 2e-17
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 56 9e-09
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 56 9e-09
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 56 9e-09
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 56 9e-09
Z80344-1|CAB02485.1| 183|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 27 5.0
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 27 5.0
U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical pr... 27 5.0
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 27 5.0
U28732-1|AAB04901.2| 540|Caenorhabditis elegans Hypothetical pr... 27 6.6
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 133 bits (321), Expect = 7e-32
Identities = 62/89 (69%), Positives = 69/89 (77%)
Frame = +3
Query: 186 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 365
V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAII NNP K +RS+GD E V F +
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75
Query: 366 VAGEKGYEAARVTGPGGESVKGSPYAADK 452
V G KG EAA VTGP G V+GS YAAD+
Sbjct: 76 VEGSKGLEAASVTGPDGGPVQGSKYAADR 104
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 88.2 bits (209), Expect = 3e-18
Identities = 43/85 (50%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +3
Query: 189 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAVEFAV 365
I + G VKW++V YGFI+RND ++D+FVHQTAI ++ K +R++GD E V F +
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121
Query: 366 VAGEKGYEAARVTGPGGESVKGSPY 440
V G+ G EAA VTGP G++V GS Y
Sbjct: 122 VEGKNGPEAANVTGPNGDNVIGSRY 146
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 85.4 bits (202), Expect = 2e-17
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Frame = +3
Query: 186 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIIRNNPRKA-VRSVGDGEAV 353
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 354 EFAVVAGEKGYEAARVTGPGGESVKGSPYA 443
F +V G KG EAA VTGP GE+V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 85.4 bits (202), Expect = 2e-17
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Frame = +3
Query: 186 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIIRNNPRKA-VRSVGDGEAV 353
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 354 EFAVVAGEKGYEAARVTGPGGESVKGSPYA 443
F +V G KG EAA VTGP GE+V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 85.0 bits (201), Expect = 2e-17
Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = +3
Query: 186 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRK-AVRSVGDGEAVEFA 362
V+ + G VKW++V YGFI+R+D ++DVFVHQTAI +++ K +R++ D E V F
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118
Query: 363 VVAGEKGYEAARVTGPGGESVKGSPY 440
+V G+ G EAA VTGP G +V GS Y
Sbjct: 119 LVDGKNGPEAANVTGPAGVNVSGSKY 144
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 56.4 bits (130), Expect = 9e-09
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +3
Query: 207 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 380
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79
Query: 381 GYEAARVTGP-GGESVKGS 434
G EA V+G G+ +KGS
Sbjct: 80 GREAYAVSGEVEGQGLKGS 98
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 56.4 bits (130), Expect = 9e-09
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +3
Query: 207 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 380
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 381 GYEAARVTGP-GGESVKGS 434
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 56.4 bits (130), Expect = 9e-09
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +3
Query: 207 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 380
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 381 GYEAARVTGP-GGESVKGS 434
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 56.4 bits (130), Expect = 9e-09
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +3
Query: 207 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVV--AGEK 380
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 381 GYEAARVTGP-GGESVKGS 434
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>Z80344-1|CAB02485.1| 183|Caenorhabditis elegans Hypothetical
protein F15D4.2 protein.
Length = 183
Score = 28.3 bits (60), Expect = 2.9
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = +3
Query: 186 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAV 365
++AE V+W V+ I R +KEDV A I +K + +V GE +E +
Sbjct: 24 LLAEHTMNAVEWEAVEVLMPRILRGKSKEDVKQLLLAEIDGMSKKRLDAVLAGETLEESS 83
Query: 366 VAGEKGYEAARVTGPGGESVK 428
+ + E +V G GES K
Sbjct: 84 SSED---EEEQVIGSAGESEK 101
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 266 GVIPIDETISTLDVEPFDSTRNL 198
G PID++ S++DV+P S+ NL
Sbjct: 1896 GTAPIDDSDSSMDVDPAGSSDNL 1918
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 266 GVIPIDETISTLDVEPFDSTRNL 198
G PID++ S++DV+P S+ NL
Sbjct: 1902 GTAPIDDSDSSMDVDPAGSSDNL 1924
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 266 GVIPIDETISTLDVEPFDSTRNL 198
G PID++ S++DV+P S+ NL
Sbjct: 1902 GTAPIDDSDSSMDVDPAGSSDNL 1924
>U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical
protein R12C12.3 protein.
Length = 340
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 252 NRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEK 380
NRN K +F+ +I+ N PR +GDG E ++ EK
Sbjct: 131 NRNTMKAGIFIIIFSIVFNFPRFFDYKIGDGYLSEMWMLDTEK 173
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 266 GVIPIDETISTLDVEPFDSTRNL 198
G PID++ S++DV+P S+ NL
Sbjct: 1902 GTAPIDDSDSSMDVDPAGSSDNL 1924
>U28732-1|AAB04901.2| 540|Caenorhabditis elegans Hypothetical
protein F45E1.5 protein.
Length = 540
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 216 KWFNVKSGYGFINRNDTKEDVFVHQTAII---RNNPRKAVRSVGDGEAVEFAVVAGEKGY 386
+W NVK+ ++ ++ + +F+ II RN A R + +E A + G GY
Sbjct: 230 QWLNVKTDINSVSLENSDDSIFMQMFNIISHERNRRWYAYRREHESLTLEEAYLIGNGGY 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,956,328
Number of Sequences: 27780
Number of extensions: 141657
Number of successful extensions: 363
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -