Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I01
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0233 - 15656930-15656998,15657459-15657591,15657677-156577...    36   0.018
07_01_0474 + 3579653-3579821,3580407-3580744                           31   0.69 
09_03_0133 - 12643343-12643552                                         29   2.8  
05_01_0019 - 129767-129931,130078-130257,130491-130728,130833-13...    29   2.8  
08_02_1365 - 26423915-26423953,26424409-26424492,26424543-264245...    29   3.7  
07_01_1153 - 10842259-10842390,10843348-10845315                       29   3.7  
03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411           28   6.5  
10_06_0094 - 10604597-10605028,10605673-10605738,10606249-10606371     27   8.5  
04_04_0604 - 26546363-26548363                                         27   8.5  

>03_03_0233 -
           15656930-15656998,15657459-15657591,15657677-15657729,
           15658640-15658690,15658790-15658859,15659009-15659223,
           15660465-15660570,15660686-15660753,15660861-15661148,
           15661253-15661408,15661450-15661544,15661632-15661788
          Length = 486

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = +2

Query: 38  PKSLFVAIFLTCFIHISLSKPTTENDLTEGRGIGSTIWGWI-----TYPFTWWYETGQ 196
           P +L   +FL C +H   +    ++DLT G G GS +WG++      + F W+Y++ Q
Sbjct: 10  PLALLALLFL-CLLHGERAA-AADDDLTSGTGDGSELWGYVQVRPKAHLFWWYYKSPQ 65


>07_01_0474 + 3579653-3579821,3580407-3580744
          Length = 168

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
 Frame = +2

Query: 152 GW-ITYPFTWWYETGQTPVNDQLVQSSTYGPYEVTEIGKPNITVSCNDQTCT-------- 304
           GW + YP T W +     + D+LV + T G + VTE+       +CN Q  T        
Sbjct: 34  GWTLEYPSTNWADGKSFQIGDKLVFTYTKGKHTVTEVDGAAFH-ACNRQGNTLMTWNSGN 92

Query: 305 -TTKCDINGCRNITCNIYDTDLTGICREYNTIKPEEISPSNKP 430
            T   D  G R   CN+ +    G+    +   P   +P++ P
Sbjct: 93  DTVALDKAGKRWFFCNVDNHCELGMKLVVDVADPNAPAPASPP 135


>09_03_0133 - 12643343-12643552
          Length = 69

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 571 DSKASKAKGCSSTTGLLSFCVDGKRGC 491
           D  +++A GC + +G  S CVDG   C
Sbjct: 40  DCPSAEADGCCTMSGCTSTCVDGVTAC 66


>05_01_0019 -
           129767-129931,130078-130257,130491-130728,130833-131236,
           131284-131427,131709-131995,132071-132150,132563-132714,
           132793-132909,133292-133450,133546-133946,134106-134423,
           135050-135095,135203-135310
          Length = 932

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 332 RNITCNIYDTDLTGICREYNTIK 400
           RNIT NI D+DLT + ++Y  I+
Sbjct: 275 RNITANIEDSDLTVLFQQYGDIR 297


>08_02_1365 -
           26423915-26423953,26424409-26424492,26424543-26424577,
           26425469-26425697
          Length = 128

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 65  LTCFIHISLSKPT-TENDLTEGRGIGSTIWGWITYPFTWWYETGQTPV 205
           + CF+      PT ++    + R     IW W+ +   WW   G+T V
Sbjct: 10  ILCFLLSHRPSPTPSQRRCPDPRMHHLQIWRWLGFGLEWWLAAGRTRV 57


>07_01_1153 - 10842259-10842390,10843348-10845315
          Length = 699

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 352 NITCNVSTAIYVTFSSSTCLVVARYCYIGFA 260
           N+T  ++   YV FSS+T  +  R+C +G++
Sbjct: 231 NLTSVITDVAYVGFSSATGTINVRHCVLGWS 261


>03_02_0422 - 8308711-8309100,8309197-8310724,8311394-8313411
          Length = 1311

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 358 IVNITCNVSTAIYVTFSSSTCLVVARYCYIGFA 260
           IVN++  V+   YV FSSST ++ + +  +G++
Sbjct: 234 IVNLSAVVTEPAYVGFSSSTGIIFSHHYVLGWS 266


>10_06_0094 - 10604597-10605028,10605673-10605738,10606249-10606371
          Length = 206

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 468 QQRAPSLRHPRLPSTQKDNNPVVDEHPLALEALLSSTVI 584
           Q+  P +RH R+P  ++      + H LA + +L +T++
Sbjct: 66  QKCRPDVRHRRVPQRRRLRPDAAEAHSLASDHVLDATMV 104


>04_04_0604 - 26546363-26548363
          Length = 666

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 358 IVNITCNVSTAIYVTFSSSTCLVVARYCYIGFA 260
           IVNI+  +    YV FSS+T ++  R+  +G++
Sbjct: 226 IVNISSVIDDTAYVGFSSATGILFCRHYVLGWS 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,191,804
Number of Sequences: 37544
Number of extensions: 339809
Number of successful extensions: 794
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)