Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I01
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   5.2  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    21   6.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.1  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 144 LYGVG*HILLLGGMKQDKRRSTINLFSHL 230
           +YG+   +L+ GG+++ K  +    F HL
Sbjct: 66  IYGLVVAVLIAGGLEEPKGYTLFKGFVHL 94


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 462 PRQQRAPSLRHPRLPSTQKDNNPVV 536
           PR  R P L  P  P   +D++ V+
Sbjct: 42  PRSNRGPVLFPPGPPPNNEDSSGVI 66


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 254 EIGKPNITVSCNDQTCTTTKCDINGCRNITCN 349
           E G P    +  ++  T T C  N C + T N
Sbjct: 410 EGGPPTGATTGPNEIVTCTNCGPNPCTHTTTN 441


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 254 EIGKPNITVSCNDQTCTTTKCDINGCRNITCN 349
           E G P    +  ++  T T C  N C + T N
Sbjct: 396 EGGPPTGATTGPNEIVTCTNCGPNPCTHTTTN 427


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 254 EIGKPNITVSCNDQTCTTTKCDINGCRNITCN 349
           E G P    +  ++  T T C  N C + T N
Sbjct: 430 EGGPPTGATTGPNEIVTCTNCGPNPCTHTTTN 461


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 254 EIGKPNITVSCNDQTCTTTKCDINGCRNITCN 349
           E G P    +  ++  T T C  N C + T N
Sbjct: 379 EGGPPTGATTGPNEIVTCTNCGPNPCTHTTTN 410


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 526 LLSFCVDGKRGCRNDGARCCLG 461
           L   C DG R   N+  RC LG
Sbjct: 608 LALICPDGGRAEINEWERCNLG 629


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 526 LLSFCVDGKRGCRNDGARCCLG 461
           L   C DG R   N+  RC LG
Sbjct: 608 LALICPDGGRAEINEWERCNLG 629


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 526 LLSFCVDGKRGCRNDGARCCLG 461
           L   C DG R   N+  RC LG
Sbjct: 608 LALICPDGGRAEINEWERCNLG 629


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,768
Number of Sequences: 438
Number of extensions: 4015
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)