Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H24
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    29   0.44 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   2.3  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    26   3.1  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   4.1  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   4.1  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   5.4  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    25   9.5  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    25   9.5  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    25   9.5  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   9.5  

>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 131 GNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKFE 256
           G      E    E KK+ +    PD+VKK FN+ +  F   E
Sbjct: 463 GQELDSKEALVTEFKKRTESLSMPDHVKKVFNDELSKFQHLE 504


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 381 SSAVLHLFKDDEYTL-QYLKDLDNMHKVVLEVRITV*KNTSHPSNLLKSSTML 226
           S  VLHLF      L + L D+  ++  +  +     KN S+P NLLK  T L
Sbjct: 187 SEYVLHLFAQIPKALCKELTDVRTLNHPLRSIFTFCFKNISNPPNLLKLLTKL 239


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 98  FVKRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVD 238
           +V  D   +S     S+IEK     K    +NFKP   KK + ++VD
Sbjct: 285 YVDSDLSESSMKEKQSKIEKYMKSDKSS--KNFKPPFQKKSWEDLVD 329


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 210 TLSGLKFSCTCFLISTNCFSISLNALPVLAASA 112
           TLSGL   C   LI   C +  ++A    AASA
Sbjct: 478 TLSGLATGCGILLIFLQCLNYLIDAYLFRAASA 510


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 185 QENFKPDNVKKQFNNMVDDFNKFEGCDVF 271
           QENF  DN+ +  +N V++   F   + F
Sbjct: 438 QENFDSDNLSESLDNSVENLTVFPSINSF 466


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 407 DPIDHPISLNKSLRSKTY*TSV 472
           DP  +PIS+N +L S +Y T V
Sbjct: 244 DPYSNPISVNDNLASSSYVTVV 265


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 110 DAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKF 253
           D+E   TG A     +  +   K    +F P N+  QF N+ + F  F
Sbjct: 72  DSELDDTGEAKRWFPRNKIRTAKYTPIDFIPKNIFLQFQNVANLFFLF 119


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 207  LSGLKFSCTCFLISTNCFSISLNALPVLAASASRFTK 97
            L GLK  C  F  S+N  ++  ++L  +  +  +FT+
Sbjct: 968  LEGLKIYCLPFFSSSNNLAVITSSLAKIEQTVEQFTE 1004


>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 281 VILTSKTTLCILSKS-FRYCKVYSSSLNKC 367
           V L S + +  LS S FRY  VYS   N C
Sbjct: 134 VFLQSLSNMSYLSPSKFRYTTVYSKQPNAC 163


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 170 IKKQVQE-NFKPDNVKKQFNNMVDDFNKF 253
           IK Q  + N K D +K   NN+  +F+KF
Sbjct: 32  IKPQKDKINIKTDKIKFFLNNLFTEFSKF 60


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 170 IKKQVQE-NFKPDNVKKQFNNMVDDFNKF 253
           IK Q  + N K D +K   NN+  +F+KF
Sbjct: 52  IKPQKDKINIKTDKIKFFLNNLFTEFSKF 80


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +2

Query: 146 EIEKQ--FVEIKKQVQE--NFKPDNVKKQFNNMVDDFNKF 253
           ++ KQ  F  I K  ++  N K D +K   NN+  +F+KF
Sbjct: 21  KVNKQNLFTNIVKPQKDKINIKTDKIKFFLNNLFTEFSKF 60


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +2

Query: 122 ASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKFEGCDVFF 274
           A   N  S+ EK+++ ++K+   N +PD       N        +  DV F
Sbjct: 221 AQNPNNKSDYEKEYMALRKRYDSNEEPDTEALSQGNYTQFELSIDKADVSF 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,224
Number of Sequences: 5004
Number of extensions: 38506
Number of successful extensions: 125
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)