Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H24
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1071 + 30585106-30585288,30585737-30585919                       42   4e-04
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848...    29   1.8  
12_01_0043 + 344084-344452,346672-347546,347635-348145                 29   3.1  
11_01_0044 + 340486-340854,341855-341911,343100-343974,344065-34...    29   3.1  
04_01_0273 - 3631903-3632527,3633566-3633742,3633890-3634120,363...    28   4.1  
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282...    27   9.6  
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161...    27   9.6  

>04_04_1071 + 30585106-30585288,30585737-30585919
          Length = 121

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 23/58 (39%), Positives = 32/58 (55%)
 Frame = -3

Query: 495 KVTSRMSTTLVQYVLLRSDLFKDMGWSIGSIVAQACHASSAVLHLFKDDEYTLQYLKD 322
           +V       +VQYV+LR DL     W +GS+VAQ CHA+ A + L    E  L+ L +
Sbjct: 22  EVGKEAEDVVVQYVVLRRDLAD--AWPLGSVVAQGCHAAVAAVTLEVKGETQLKNLAE 77


>02_04_0179 + 20682852-20684510,20684593-20684661,20684741-20684809,
            20686779-20688206
          Length = 1074

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
 Frame = +2

Query: 92   HAFVKRDAEAASTGNAFSEIEKQFVEIKKQV---QENFKPDNVKKQFNNMVDDFNKFEGC 262
            H   K+D + A    A  E EK   EIKK +           V K     VD   K +GC
Sbjct: 994  HGVWKKDQKEADQKKAKEEEEKHMAEIKKNMGIPDSTLDEHRVSKNDQKEVDQNKKGKGC 1053

Query: 263  D 265
            +
Sbjct: 1054 E 1054


>12_01_0043 + 344084-344452,346672-347546,347635-348145
          Length = 584

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -3

Query: 504 SETKVTSRMSTTLVQYVLLRSDLFKDMGWSIGSIVAQACHASSAVLHLFKD-DEYTLQYL 328
           S  K +  +S   + Y+   SDL K +GWS G  +      +  +L        Y LQY 
Sbjct: 52  SALKASLGVSQEALNYLATASDLGKALGWSSGLALIHLPLPAVLLLSAASGLAAYALQYA 111

Query: 327 KDLDNMH 307
             LD +H
Sbjct: 112 LILDYLH 118


>11_01_0044 +
           340486-340854,341855-341911,343100-343974,344065-344398,
           345553-345645,345913-346062
          Length = 625

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -3

Query: 504 SETKVTSRMSTTLVQYVLLRSDLFKDMGWSIGSIVAQACHASSAVLHLFKD-DEYTLQYL 328
           S  K +  +S   + Y+   SDL K +GWS G  +      +  +L        Y LQY 
Sbjct: 52  SALKASLGVSQEALNYLATASDLGKALGWSSGLALIHLPLPAVLLLSAASGLAAYALQYA 111

Query: 327 KDLDNMH 307
             LD +H
Sbjct: 112 LILDYLH 118


>04_01_0273 -
           3631903-3632527,3633566-3633742,3633890-3634120,
           3634431-3634636
          Length = 412

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -3

Query: 453 LLRSDLFKDMGWSIGSI---VAQACHASSAVLHLFKDDEYTLQYLKDLD 316
           L R  LF+++GWS+G+       +  ASS +L     D Y   Y K++D
Sbjct: 257 LRRWGLFEELGWSVGNEDDGDQASSFASSILLWHIATDVYLKLYRKEID 305


>03_01_0363 +
           2827990-2828055,2828215-2829306,2829715-2829837,
           2829994-2830110,2830248-2830429,2830558-2830744,
           2830846-2831055,2831177-2831305,2832179-2832247,
           2832751-2832873,2832957-2833007,2833101-2833250
          Length = 832

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = -3

Query: 309 HKVVLEVRITV*KNTSHPSNLLKSSTMLLNCFLTLSGLKFSCTCF--LISTNCFSISLNA 136
           HK +   R +V    +   N+  +S  L N   T+  LKF+ T +   +   C  IS + 
Sbjct: 436 HKQISIFRQSVYMGKAIIVNIFLASCKLGNAVFTMDSLKFALTLYGHKLPVLCMDISSDG 495

Query: 135 LPVLAASASRFTK 97
           + ++  SA +  K
Sbjct: 496 VLIVTGSADKNLK 508


>03_01_0204 +
           1611837-1611840,1611926-1612048,1614570-1614659,
           1615529-1616095,1616235-1616959,1617065-1617252,
           1617331-1617778
          Length = 714

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 17  RKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQ 181
           + VV  D     +L+  +   F S+H  +    E  S+GN  ++IE+   +++ Q
Sbjct: 321 KNVVESDHSPIPNLLDPIVTLFDSIHGNILNTPEFTSSGNMSNDIEQPKTDLESQ 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,072,244
Number of Sequences: 37544
Number of extensions: 212119
Number of successful extensions: 469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)