Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H24
         (539 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC073803-1|AAH73803.1|  140|Homo sapiens similar to CG14903-PA p...    66   6e-11
AB079368-1|BAC81343.1|  882|Homo sapiens PIWIL3 protein.               29   7.9  

>BC073803-1|AAH73803.1|  140|Homo sapiens similar to CG14903-PA
           protein.
          Length = 140

 Score = 66.5 bits (155), Expect = 6e-11
 Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
 Frame = -3

Query: 468 LVQYVLLRSDLFK-DMGWSIGSIVAQACHASSAVLHLFKDDEYTLQYLKDLDNMHKVVLE 292
           LVQY++LR DL +    W  G++VAQACHA++A LH  +D  +T  YL++L  M KVVLE
Sbjct: 25  LVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALHTHRDHPHTAAYLQELGRMRKVVLE 84


>AB079368-1|BAC81343.1|  882|Homo sapiens PIWIL3 protein.
          Length = 882

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +2

Query: 86  SVHAFVKRDAEAASTGNAFSEIEKQF---VEIKKQVQENFKPDNVKKQFNNMVDDFNKFE 256
           + + F+KR +  A TGN   E+  +    + + K   + ++ D++  +  N  D FNK +
Sbjct: 293 TAYDFIKRTSAQAQTGNIREEVTNKLIGSIVLTKYNNKTYRVDDIDWK-QNPEDTFNKSD 351

Query: 257 GCDVFF 274
           G  + +
Sbjct: 352 GSKITY 357


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,081,418
Number of Sequences: 237096
Number of extensions: 1219643
Number of successful extensions: 4127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4127
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)