Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H24
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-7|AAF60890.4|  211|Caenorhabditis elegans Hypothetical ...    66   2e-11
AC006742-5|AAF60496.1|  239|Caenorhabditis elegans Hypothetical ...    31   0.53 
AC006742-4|AAF60495.1|  239|Caenorhabditis elegans Hypothetical ...    31   0.53 
Z81125-3|CAB03384.1|  790|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>AC024876-7|AAF60890.4|  211|Caenorhabditis elegans Hypothetical
           protein Y94H6A.7 protein.
          Length = 211

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 29/63 (46%), Positives = 43/63 (68%)
 Frame = -3

Query: 477 STTLVQYVLLRSDLFKDMGWSIGSIVAQACHASSAVLHLFKDDEYTLQYLKDLDNMHKVV 298
           +T+ V YV+LR DL   +GW +G++  QA HA+SA + +F++D  T  Y  +LD+MHKV 
Sbjct: 97  ATSYVMYVILRRDLQTKLGWPLGAVCTQAAHAASASMWIFRNDPNTEAYTSNLDSMHKVT 156

Query: 297 LEV 289
           L V
Sbjct: 157 LGV 159


>AC006742-5|AAF60496.1|  239|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.7 protein.
          Length = 239

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +2

Query: 14  IRKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIK--KQVQ 187
           + KV   +  + K ++   A CF+++H     D  AAS     ++ ++     K  K++ 
Sbjct: 42  LEKVSLPNNSLEKLMVKHFANCFVALHTMNSLDELAASAPKFVADFKQAIGNKKTLKELH 101

Query: 188 ENFKPDNVKKQ 220
           +NFK  + K+Q
Sbjct: 102 DNFKSSDTKQQ 112


>AC006742-4|AAF60495.1|  239|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.3 protein.
          Length = 239

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +2

Query: 14  IRKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIK--KQVQ 187
           + KV   +  + K ++   A CF+++H     D  AAS     ++ ++     K  K++ 
Sbjct: 42  LEKVSLPNNSLEKLMVKHFANCFVALHTMNSLDELAASAPKFVADFKQAIGNKKTLKELH 101

Query: 188 ENFKPDNVKKQ 220
           +NFK  + K+Q
Sbjct: 102 DNFKSSDTKQQ 112


>Z81125-3|CAB03384.1|  790|Caenorhabditis elegans Hypothetical
           protein T22A3.5 protein.
          Length = 790

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
 Frame = +2

Query: 8   VLIRKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQ------FVE 169
           V+ ++++G   +++K ++I   +   +    VK+  + AS    F ++  +      F+E
Sbjct: 543 VMKKEMIGNGSQLSKVILILGDIQEEAEAVGVKQATQMASQ-RLFKKMHPELLTYGSFLE 601

Query: 170 IKKQVQENFKPDNVKKQFNNMVDDFNKFEGCDVFF 274
           I  ++ +  K DN KKQ + ++ +F  +  C VFF
Sbjct: 602 IYGRLDDKSKIDNAKKQHDEILFEFFNYNKC-VFF 635


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
            C38D4.3 protein.
          Length = 1784

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = +2

Query: 104  KRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKFE 256
            K D E  S  N   E+E    E+K Q QEN +    +K F N  DDF   E
Sbjct: 1127 KHDEEKDSEKNVVDEME----EVKDQEQENDECIESEKTFENQ-DDFEVLE 1172


>Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical
           protein F47B8.5 protein.
          Length = 579

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 5   EVLIRKVVGRDFKMNKHLIIFLAVCFISVHAF 100
           EV+  ++V    K+ K  IIF A+C  S+ +F
Sbjct: 290 EVIHMRIVFAKIKLTKPAIIFEAICLFSLFSF 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,224,072
Number of Sequences: 27780
Number of extensions: 216498
Number of successful extensions: 619
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)