Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H23
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.24 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   3.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 158 YQKFGFCLCNCCDFN 114
           Y+   F LC+CCDF+
Sbjct: 739 YEAHCFALCHCCDFD 753


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +3

Query: 405 VIDNFMIQXXXXXXXXXXXXRSIYGERFNDENFKL 509
           ++  F ++            + IYG  FND NF++
Sbjct: 365 LVHGFPLEYEYVLAVSNRIQKVIYGFDFNDVNFRI 399


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 318 KTVPKTVDNFYQLAQKPEGE 377
           K + KT++  Y LA  P+G+
Sbjct: 468 KELSKTINFTYSLALSPDGQ 487


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 485 TFSINAPTTSAITL 444
           T +IN PTTS I++
Sbjct: 836 TTTINTPTTSVISM 849


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,262
Number of Sequences: 438
Number of extensions: 2902
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)