Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H22
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81139-3|CAB03482.1|  520|Caenorhabditis elegans Hypothetical pr...    29   2.1  

>Z81139-3|CAB03482.1|  520|Caenorhabditis elegans Hypothetical
           protein W05H5.3 protein.
          Length = 520

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
 Frame = +2

Query: 149 GSLMFSV*KFHFV*TLANKIFSSPIVIYL-IYPR*PLIQN-CKLKF*FDIKTTISKLN-- 316
           GS +F + +  F+ T+A  +  + +  +L ++   P++Q   K KF  + K   + L+  
Sbjct: 233 GSKVFRIDEIPFLYTVAASLIIAVLAGFLALFVVGPIMQRKLKSKFTDEQKFVTATLHGW 292

Query: 317 LVNKKQNSKESIFCFKYS 370
           L+ KK+  K S+F  KYS
Sbjct: 293 LIRKKRTKKISVFILKYS 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,022,591
Number of Sequences: 27780
Number of extensions: 189422
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)