Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H21
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    28   1.1  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   5.6  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   5.6  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    25   9.9  

>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 572 KKHSY*VFRXWYTYCFSGYLKI 507
           K HSY V   WY+YC+    K+
Sbjct: 180 KLHSYNVVNGWYSYCYHSLNKL 201


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 346 LLICNYKI*FLFVVWNCHTHTDNK 417
           +L C YKI FL+ + NC T  + +
Sbjct: 3   ILTCRYKILFLYNLRNCFTFQNQR 26


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 346 LLICNYKI*FLFVVWNCHTHTDNK 417
           +L C YKI FL+ + NC T  + +
Sbjct: 3   ILTCRYKILFLYNLRNCFTFQNQR 26


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 525 FWILKNSKALGYMFEVIHYFKYITIHK*KYSYICIWFIICVC 400
           +++L  S A  Y F + HY + + I +    Y   WF I  C
Sbjct: 183 YFVLAQSNATNYWFSLKHYCRSVEICE---EYFHGWFGISKC 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,857
Number of Sequences: 5004
Number of extensions: 45078
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)