Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H21
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0937 - 24568475-24569145,24569215-24569319,24569419-245699...    29   4.4  

>12_02_0937 -
           24568475-24569145,24569215-24569319,24569419-24569991,
           24570480-24570780,24570867-24572039,24572260-24572328
          Length = 963

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 124 GKRRGGRVLKTGLVKKPKAIDEQLADNTPKDAWSLYMQEVKK 249
           G   G R ++TG +K     D +   N P+DA S    E KK
Sbjct: 4   GSSEGSRDMRTGYLKTTAHNDAEPTGNLPEDAQSTNNGEAKK 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,297,407
Number of Sequences: 37544
Number of extensions: 248930
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)