Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H21
         (668 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC015347-1|AAH15347.1|  176|Homo sapiens chromosome 19 open read...    67   6e-11
BC004533-1|AAH04533.1|  176|Homo sapiens chromosome 19 open read...    67   6e-11
BC000216-1|AAH00216.1|  176|Homo sapiens chromosome 19 open read...    67   6e-11

>BC015347-1|AAH15347.1|  176|Homo sapiens chromosome 19 open reading
           frame 43 protein.
          Length = 176

 Score = 66.9 bits (156), Expect = 6e-11
 Identities = 37/66 (56%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
 Frame = +1

Query: 112 LPFIGKRRGGR--VLKTGLV-KKPKAIDEQLADNTPKDAWSLYMQEVKKYRETSCEEERK 282
           L F+GKRRGG    LKTG+V KK K  DE L      DAW+ YM EVKKY+   C ++ K
Sbjct: 113 LSFVGKRRGGNKLALKTGIVAKKQKTEDEVLTSKG--DAWAKYMAEVKKYKAHQCGDDDK 170

Query: 283 TRPLVK 300
           TRPLVK
Sbjct: 171 TRPLVK 176


>BC004533-1|AAH04533.1|  176|Homo sapiens chromosome 19 open reading
           frame 43 protein.
          Length = 176

 Score = 66.9 bits (156), Expect = 6e-11
 Identities = 37/66 (56%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
 Frame = +1

Query: 112 LPFIGKRRGGR--VLKTGLV-KKPKAIDEQLADNTPKDAWSLYMQEVKKYRETSCEEERK 282
           L F+GKRRGG    LKTG+V KK K  DE L      DAW+ YM EVKKY+   C ++ K
Sbjct: 113 LSFVGKRRGGNKLALKTGIVAKKQKTEDEVLTSKG--DAWAKYMAEVKKYKAHQCGDDDK 170

Query: 283 TRPLVK 300
           TRPLVK
Sbjct: 171 TRPLVK 176


>BC000216-1|AAH00216.1|  176|Homo sapiens chromosome 19 open reading
           frame 43 protein.
          Length = 176

 Score = 66.9 bits (156), Expect = 6e-11
 Identities = 37/66 (56%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
 Frame = +1

Query: 112 LPFIGKRRGGR--VLKTGLV-KKPKAIDEQLADNTPKDAWSLYMQEVKKYRETSCEEERK 282
           L F+GKRRGG    LKTG+V KK K  DE L      DAW+ YM EVKKY+   C ++ K
Sbjct: 113 LSFVGKRRGGNKLALKTGIVAKKQKTEDEVLTSKG--DAWAKYMAEVKKYKAHQCGDDDK 170

Query: 283 TRPLVK 300
           TRPLVK
Sbjct: 171 TRPLVK 176


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,735,357
Number of Sequences: 237096
Number of extensions: 1471841
Number of successful extensions: 2247
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2237
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)