Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_H20
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 46 6e-06
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 33 0.042
SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 1.6
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 26 3.7
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||... 26 3.7
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 4.8
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 26 4.8
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 25 6.4
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 8.5
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 45.6 bits (103), Expect = 6e-06
Identities = 25/89 (28%), Positives = 44/89 (49%)
Frame = +2
Query: 44 VVIYNGQLDVIVAYPLTLNYLRHLNFTGAEDYKTAKRYIWNVDGEVAGYVKQAGKLVEIM 223
V+IY G D I Y + L + G ++ A+ W+ +G+ AG K +
Sbjct: 913 VLIYAGDADYICNYMGNEAWTDALEWAGQREFYEAELKPWSPNGKEAGRGKSFKNFGYLR 972
Query: 224 IRNAGHMVPTDQPKWAVDLITHFTHEKLF 310
+ AGHMVP +QP+ +++++ + LF
Sbjct: 973 LYEAGHMVPFNQPEASLEMLNSWIDGSLF 1001
>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 510
Score = 32.7 bits (71), Expect = 0.042
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Frame = +2
Query: 17 VSELLDHYYVVIYNGQLDVIVAYPLTLNYLRHLNFTGAEDYKTAKR---YIWNVDGEVAG 187
+ +L+ ++++ G+ D + Y R L + GA ++ Y+ + +G
Sbjct: 350 IQDLVSTVPILLFYGENDFLCNYLSGEKLTRSLEWNGAVGFQNQSAQPFYLPGYSDQPSG 409
Query: 188 YVKQAGKLVEIMIRNAGHMVPTDQPKWAVDLITHF 292
+ L I A HMVP D P LIT F
Sbjct: 410 SYVSSRNLTFARIVEASHMVPYDHPNEMKTLITAF 444
>SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 95 LNYLRHLNFTGAEDYKTAKRYIWNVDGEVAGYVKQAGKLVEIM 223
L +++ FT +EDYK+ +R + + +A + K+ G L + M
Sbjct: 52 LEHVQSNEFTESEDYKSIERSLAVTEAVMARFEKEMGSLRDQM 94
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +2
Query: 29 LDHYYVVI--YNGQLDVIVAYPLTLNYLRHLNFTGAEDYKTAKRYIWNVDGEVA--GYV 193
L H+++ + + Q+ +I++ PL + L + FTG E + Y WN+ G A GY+
Sbjct: 62 LRHWFIFLATHKAQMTLILS-PLVM--LVTIPFTGKETKNSIASYDWNLTGVAARLGYL 117
>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 41 YVVIYNGQLD-VIVAYPLTLNYLRHLNFTGAE 133
YV+ Y+ + ++ YP+ NY LNF AE
Sbjct: 15 YVIFYDTVIPHSVIQYPVYFNYTTGLNFPTAE 46
>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 539 DIYKYFLILQYXCLKTALLK 598
D+YKY L+LQ L ALL+
Sbjct: 244 DVYKYDLVLQIRFLNRALLR 263
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 65 LDVIVAYPLTLNYLRHLNFTGAEDYKTAKRYIWNVDGEVAGYVKQAG 205
L++IV TLN LRH+++ + +AK + + G+ ++++ G
Sbjct: 408 LEIIVQVDETLNQLRHIDYD--DTLHSAKSLFYEILGQNNTFLQREG 452
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 593 AKLFLNRXTVILRSICRYQYILQSDN 516
AKL++NR TV+LR + + SDN
Sbjct: 261 AKLYMNRATVLLRLKRPEEALSDSDN 286
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 5 EAPWVSELLDHYYVVIYNGQL 67
E P +LLDHYY ++G L
Sbjct: 134 EGPMSMDLLDHYYKKHFHGTL 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,635
Number of Sequences: 5004
Number of extensions: 41246
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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