Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H19
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    27   2.6  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    26   3.5  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   6.1  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   8.1  

>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 418 DATDDIRACFFANYTSALGTFKI 350
           DA   +   FF NYTSA G F I
Sbjct: 229 DAVKQMNPEFFPNYTSAAGVFAI 251


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -3

Query: 352 ILMYLPPA*YSDFVIN*RNYTPHTLYAGT*VP*WTLRFI---ILSKFRIYVTASSTQCKH 182
           ++ YL P     FVIN   ++P  L A    P + L +I   I+ +F  Y T    QC+H
Sbjct: 57  LISYLTPRWRERFVIN-GIHSPRLLSALLKRPFFLLVYIDAPIMLRFNRYKTYVILQCQH 115

Query: 181 VTEIF 167
           V   F
Sbjct: 116 VVANF 120


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 259 P*WTLRFI--ILSKFRIYVTASSTQCKHVTEIFPDNYAC 149
           P W   F+  + +   +YV  SST C +  +I+  N+ C
Sbjct: 84  PLWKKLFVATVYTFLEVYVIWSSTACINFFDIYQTNWHC 122


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 542 FYHRKLRLILELYMWVRTHVHRRVIRPHYQP--YNHRF 435
           F+HR L    +LY  +  H HR  + P+     YNH F
Sbjct: 147 FWHRYLHYNKKLYNMIHAHHHRLQV-PYAMGALYNHPF 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,986
Number of Sequences: 5004
Number of extensions: 49279
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)