Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_H18
(525 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 29 0.32
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 27 1.3
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 26 4.0
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 26 4.0
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit... 25 5.2
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 5.2
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 25 5.2
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 25 6.9
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 25 6.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.1
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 29.5 bits (63), Expect = 0.32
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 239 LYNVHRACVGAYFVCWSVYSEEYC-LYFYPKHQTYLY 346
++ + C Y W + S + C L++ P H +Y++
Sbjct: 344 IHQILVGCSNGYLALWDILSSQECPLFYIPYHDSYIH 380
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 383 QQKRHLTFQYSLST-NTSDVSDKNTNNILHCRPTNK 279
++K LT +++ S+ +T+ +SDK +H RP N+
Sbjct: 277 KKKESLTAEFTTSSPSTASLSDKKNPGSVHIRPNNE 312
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -3
Query: 310 TIFFTVDRPTNKISPYARSMNVIESIHNKYKKQSDQ 203
+IFFT T K S R +IE + +KY+KQSD+
Sbjct: 327 SIFFTGSAGTGK-SVLLRK--IIEVLKSKYRKQSDR 359
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 266 GAYFVCW--SVYSEEYCLYFYPKHQTYLYLKNIGKLSAFFVVILKYLLPLIF 415
G +FV + S+ + +CL + H+ YL + A + +L +L +IF
Sbjct: 120 GLFFVSYFFSLKNNPFCLMLFSSHEKMNYLHRWLSVYAVLISVLHGILFMIF 171
>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
Tom40|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 316 IQTIFFTVDRPTNKISPYARSMNVI 242
IQT+F +V++ KI Y S+N+I
Sbjct: 4 IQTLFTSVNQVGEKIDSYKSSLNLI 28
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 103 EPHGFL*PNKYVVYRNPDCY 44
E HGF+ N +V R+P+C+
Sbjct: 1485 ELHGFIRANAEMVLRSPECF 1504
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +2
Query: 260 CVGAYFVCWSVYSEEYCLYFYPKHQTYLYLKNIGKLSAFF 379
C F CW S E + Y Q + + +I L AF+
Sbjct: 68 CRDFMFFCWRFQSTEDAMDVYDTLQELMSINSINMLYAFY 107
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +2
Query: 14 PVAVGVGVLFIAI--GVPVYYVFIWLE 88
P+AVGV A GV ++++F+WLE
Sbjct: 83 PLAVGVSPYPNAKLGGVRIFWIFVWLE 109
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 329 HQTYLYLKNIGKLSAFFVVILKYLLPLIFKKLTL 430
H Y Y++ +LS FF+ I + + ++F K L
Sbjct: 393 HDLYSYIERFKQLSLFFLNISEDAISVVFLKQML 426
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 254 RACVGAYFVCWSVYSEEYCLYFYPKHQTYLYLKNI 358
R C+ +C+ + E+ +++P H+ ++ +KNI
Sbjct: 2597 RNCLAEDVICFLRHMLEHQGFWHPLHKEWVTIKNI 2631
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,877
Number of Sequences: 5004
Number of extensions: 41129
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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