Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H18
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68216-1|CAA92459.1|  493|Caenorhabditis elegans Hypothetical pr...    47   7e-06
AF026214-3|AAB71312.2|  493|Caenorhabditis elegans Amino acid tr...    40   0.001
U50308-4|AAG24030.2|  483|Caenorhabditis elegans Amino acid tran...    37   0.008
Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    30   0.88 
Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF003144-6|AAV58875.1|  521|Caenorhabditis elegans Amino acid tr...    29   2.0  
AF003144-5|AAV58874.1|  537|Caenorhabditis elegans Amino acid tr...    29   2.0  
U55369-2|AAK52183.2|  526|Caenorhabditis elegans Udp-glucuronosy...    28   3.6  
Z77658-3|CAB01159.1|  112|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    27   6.2  
U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z75952-4|CAB00094.2|  303|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z70035-10|CAA93871.2|  473|Caenorhabditis elegans Hypothetical p...    27   8.2  
AL132862-24|CAB60560.1|  173|Caenorhabditis elegans Hypothetical...    27   8.2  
AF188748-1|AAF00545.1|  198|Caenorhabditis elegans putative tyro...    27   8.2  

>Z68216-1|CAA92459.1|  493|Caenorhabditis elegans Hypothetical
           protein F27C8.1 protein.
          Length = 493

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 8   AHPVAVGVGVLFIAIGVPVYYVFI-WLEKPMWFQTVCNSFNLMCSKMFVCLPEDSKE 175
           A P   G+G+L +   VPVY +FI W  KP WF    +S  +   K+F+ + ED ++
Sbjct: 437 AAPRDTGIGLLIMLSAVPVYGIFIGWKNKPKWFNEFIDSSTVFIQKLFMVVDEDKED 493


>AF026214-3|AAB71312.2|  493|Caenorhabditis elegans Amino acid
           transporter protein 3 protein.
          Length = 493

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 11  HPVAVGVGVLFIAIGVPVYYVFI-WLEKPMWFQTVCNSFNLMCSKMFVCLPEDSKE 175
           +P    +G+L +  GVPVY +FI W  KP    ++ +S  +   K+F+ +  + +E
Sbjct: 438 NPKDTAIGILIMLSGVPVYLIFIAWKGKPKCIDSLTDSVTIFTQKLFMVVDANKEE 493


>U50308-4|AAG24030.2|  483|Caenorhabditis elegans Amino acid
           transporter protein 2 protein.
          Length = 483

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 32  GVLFIAIGVPVYYVFIWLE-KPMWFQTVCNSFNLMCSKMFVCLPE 163
           GV  +  G+P+Y +F++ + +P + Q+V   F     K+F C+PE
Sbjct: 435 GVFLVLSGIPIYVLFVYNKYRPGFIQSVWIGFTHFIQKLFYCVPE 479


>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +2

Query: 299 EEYCLYFYPKHQTYLYLKNIGKLSAFFVVILKYLLPLIFKKLTLVTQPPYPALLNLIYTS 478
           + +CLYF P ++ YL   NI  + A  VV+    +  I K + L+  P       L YT+
Sbjct: 115 QRFCLYFMPNYEKYL---NI-SVEALNVVVRNLYICFIIKSVMLIILPYIYTANILTYTT 170


>Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical
           protein C36A4.8 protein.
          Length = 547

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 239 LYNVHRACVGAYFVCWSVYSEEYCLYFYPKHQTYLY-LKNIGKLSAFFVVILKYLLPLIF 415
           L  + + C G    C+   S E     + KH   +   KNI  L    VV ++++L  I 
Sbjct: 467 LIELVQQCGGEILSCYENLSPEKLYIIFSKHSKAIEESKNIENLYKCDVVTMEWVLDSIS 526

Query: 416 KKLTLVTQP 442
           + L L TQP
Sbjct: 527 EYLILPTQP 535


>AF003144-6|AAV58875.1|  521|Caenorhabditis elegans Amino acid
           transporter protein5, isoform b protein.
          Length = 521

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 20  AVGVGVLFIAIGVPVYYVFIWLEK-PMWFQTVCNSFNLMCSKMFVCLPE 163
           +  + +     G  +YYVFI     P W   +     L C  +F CLP+
Sbjct: 419 STALAIAICLFGFVLYYVFIHKAIFPRWLVALNKKVTLWCCILFDCLPD 467


>AF003144-5|AAV58874.1|  537|Caenorhabditis elegans Amino acid
           transporter protein5, isoform a protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 20  AVGVGVLFIAIGVPVYYVFIWLEK-PMWFQTVCNSFNLMCSKMFVCLPE 163
           +  + +     G  +YYVFI     P W   +     L C  +F CLP+
Sbjct: 419 STALAIAICLFGFVLYYVFIHKAIFPRWLVALNKKVTLWCCILFDCLPD 467


>U55369-2|AAK52183.2|  526|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein48 protein.
          Length = 526

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 153 QTNILEHIRLKELHTVWNHMGFSSQINT*YTGTPIAI 43
           QT +L H RLK   T   H G++S + + Y G P+ +
Sbjct: 358 QTAVLAHPRLKAFIT---HAGYNSLMESAYAGVPVIL 391


>Z77658-3|CAB01159.1|  112|Caenorhabditis elegans Hypothetical
           protein F14D7.3 protein.
          Length = 112

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 325 ETSDVFVLKEYWKVKCLFCCYIEVSFATNFQKVNTCYPTSLSCTP*FNLY 474
           ETS  ++     K+ C F  Y ++S+  NF +   C P+S +     NLY
Sbjct: 27  ETSYCYMTLLPGKISC-FLIY-QISYGHNFYEATACMPSSCNEEEFLNLY 74


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 352  EYWKVKCLFCCYIEVSFATNFQKVNTCYP 438
            EY + KC FCC I V F   F   + C P
Sbjct: 3681 EYLEYKCRFCCSIAVYFC--FGTTHFCAP 3707


>U40952-1|AAK68681.3|  436|Caenorhabditis elegans Hypothetical
           protein C03B1.13 protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 368 SAFFVVILKYLLPLIFKKLTLVTQPPYPALLN 463
           S FF++ +  ++P++F    L+  PP P  L+
Sbjct: 121 SRFFIMQISAVIPILFLLFVLIITPPTPNYLS 152


>Z75952-4|CAB00094.2|  303|Caenorhabditis elegans Hypothetical
           protein F29D10.3 protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 319 LSETSDVFVLKEYWKVKCLFCCYIEVSFATNFQKVN 426
           + E  D  ++K YW   CL    I + F T  QKVN
Sbjct: 55  IQENWDNCLVKCYWDDDCLVSYCIGLRFGTVVQKVN 90


>Z70035-10|CAA93871.2|  473|Caenorhabditis elegans Hypothetical
           protein R09D1.12 protein.
          Length = 473

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 43  YSNRGSGILRIYLARETHVVPNSVQLF*SNVL 138
           Y+NRG+ I   Y+  +T + P+S+     N L
Sbjct: 95  YTNRGNAIRNSYVQVQTEITPSSILAVQENTL 126


>AL132862-24|CAB60560.1|  173|Caenorhabditis elegans Hypothetical
           protein Y73F8A.31 protein.
          Length = 173

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = -2

Query: 353 SLSTNTSDVSDKNTNNILHCRPTNKQNKPLR-TLYERYREYS**I*ETIRSNESLSLAII 177
           S ST+ S ++ +  N  +HC  TN+ +  +R  L  ++ E +  I +   SN+S +L++I
Sbjct: 15  SRSTHPSQLASRIGNGRIHCLITNEISNSVREELENKFDEVN--IVDFFNSNDSENLSLI 72

Query: 176 IPSNLQV 156
              +L V
Sbjct: 73  GRPDLAV 79


>AF188748-1|AAF00545.1|  198|Caenorhabditis elegans putative
           tyrosine kinase receptorR09D1.12 protein.
          Length = 198

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 43  YSNRGSGILRIYLARETHVVPNSVQLF*SNVL 138
           Y+NRG+ I   Y+  +T + P+S+     N L
Sbjct: 38  YTNRGNAIRNSYVQVQTEITPSSILAVQENTL 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,044,804
Number of Sequences: 27780
Number of extensions: 224138
Number of successful extensions: 637
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)