Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H14
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   3.8  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    26   3.8  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   3.8  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   5.0  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    25   6.6  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   6.6  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   8.8  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    25   8.8  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    25   8.8  

>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 238 RAAKSVDLHNLVSVYIHAKVYGATQLLEYCQGFLLQNMVALLTYDDSVKRLLFGKR 405
           R +K + L    +  IH  V  A  +++ C   +  N+  +   DD   RLL G R
Sbjct: 318 RGSKLISLELTDTARIHVSVINA--IVDCCPNLISLNLSRIFYLDDECVRLLAGCR 371


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 16  LAPPRTSNESMPPASTAPPLVQINDIRYHIFEQVMKYLYS 135
           L  P+  N+++P  S +  L  IN   +H F   +KY  S
Sbjct: 234 LTSPKIDNKNLPKNSASLILPPINYDTFHSFLDSLKYFLS 273


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 141 PSRVKVFHYLLKNMISYVVNLY 76
           P +V  FH +LK  IS   NLY
Sbjct: 189 PEQVDTFHVVLKKFISETPNLY 210


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 167 QMYWRFSQRLPSSSCYHFKDTVKRERPNLSTYI 265
           Q Y+     +P    Y F+D +   RP++  Y+
Sbjct: 828 QCYFLIQPEMPLDMLYEFEDVIGYVRPSMKVYM 860


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 4   RGAMLAPPRTSNESMPPASTAPPLVQINDIRYHIFEQVMKYLYSGG 141
           +G + +P    N + P  S  PP+ ++ DI     EQ ++YL   G
Sbjct: 243 QGYLASPVPFLNGNEPANSGLPPIERVEDIDELSKEQCVQYLKGYG 288


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 164 RQMYWRFSQRLPSSSCYHFKDTVKRERPNLSTYITLSLFIF 286
           R ++   + RL    C +F D +   R +LS  +T   FIF
Sbjct: 219 RNIFHDSADRLQRYVCQYFSDIIFDSRDSLSDSMTTPEFIF 259


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 114 SNEIPLLGRVRQFRYT*DRCTG 179
           S+++PLLG V    Y   RCTG
Sbjct: 806 SSKVPLLGGVTNVDYGWARCTG 827


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 138 SRVKVFHYLLKNMISYVVNLYKRGSCARR 52
           SRVK F  L KN ++  + L   G CA +
Sbjct: 293 SRVKTFPLLWKNPVTGKLALQTHGCCAEK 321


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 195 SRCENLQYICLRYI*TGA-PSRVKVFHYLLKNMIS 94
           +RC N   +CLR +     P+RV   H+ LKN+IS
Sbjct: 5   NRCSNSS-LCLRNVTPKQHPARVCSNHWQLKNLIS 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,318
Number of Sequences: 5004
Number of extensions: 51050
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)