Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H14
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    27   0.19 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.3  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = -1

Query: 530 LPYYIVRFVKACCYLVFV*PFLDSILFCNVVNKAPRTLCPGN----RLPKSNR-FTESSY 366
           LP  ++  +     ++FV  F+ +I+ C V+ + P    P N     L  S+  F     
Sbjct: 28  LPLTLIVPITLTYVVIFVTGFVGNIITCIVIWRNPSMQTPTNYYLFNLAVSDLLFLILGL 87

Query: 365 VRSATMFWSRKPWQY 321
               ++FW + PWQ+
Sbjct: 88  PFELSVFWQQYPWQW 102


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 452 FCNVVNKAPRTLCPGNRLPKSNR 384
           FCN+V+ +P+T+ P   +  S R
Sbjct: 358 FCNIVSCSPQTVHPETIIDVSRR 380


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 524 YYIVRFVKACCYLVFV 477
           YY+++    CC LV V
Sbjct: 243 YYLIQIYIPCCMLVIV 258


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 524 YYIVRFVKACCYLVFV 477
           YY+++    CC LV V
Sbjct: 243 YYLIQIYIPCCMLVIV 258


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 114 LLKNMISYVVNLYKRGSC 61
           LLK+  S + N YK+G C
Sbjct: 8   LLKSRESLLSNAYKQGFC 25


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 181 PPVHLSQVYLNWRTLPSKG 125
           PP +   V+ +WR  P+ G
Sbjct: 35  PPEYSDLVHPHWRAFPAPG 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,508
Number of Sequences: 438
Number of extensions: 3765
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)