Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_H13
(540 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 265 2e-73
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 265 2e-73
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 6.1
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 6.1
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 6.1
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 265 bits (649), Expect = 2e-73
Identities = 123/154 (79%), Positives = 134/154 (87%)
Frame = +2
Query: 77 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 256
MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1 MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60
Query: 257 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXX 436
VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF RYF
Sbjct: 61 VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120
Query: 437 XXXXXXXTSLCFVYPLDFARTRLAADVGQGDGQR 538
TSLCFVYPLDFARTRLAADVG+ G+R
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKAGGER 154
Score = 28.7 bits (61), Expect = 0.040
Identities = 32/144 (22%), Positives = 53/144 (36%)
Frame = +2
Query: 104 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGL 283
F + +GG + A S V P++ + L V K E + + G+ + +I K G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGE-REFTGLGNCLTKIFKADGI 172
Query: 284 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXXXXXXXXXTS 463
+RG +V +A F F D + + K T F + S
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPFLISWGIAQVVTTVAGIVS 230
Query: 464 LCFVYPLDFARTRLAADVGQGDGQ 535
YP D R R+ G+ +
Sbjct: 231 ----YPFDTVRRRMMMQSGRAKSE 250
Score = 27.1 bits (57), Expect = 0.12
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +2
Query: 164 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 322
P + V+ + +Q S + + YK + + I K +G +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 265 bits (649), Expect = 2e-73
Identities = 123/154 (79%), Positives = 134/154 (87%)
Frame = +2
Query: 77 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 256
MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1 MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60
Query: 257 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXX 436
VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF RYF
Sbjct: 61 VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120
Query: 437 XXXXXXXTSLCFVYPLDFARTRLAADVGQGDGQR 538
TSLCFVYPLDFARTRLAADVG+ G+R
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKAGGER 154
Score = 28.7 bits (61), Expect = 0.040
Identities = 32/144 (22%), Positives = 53/144 (36%)
Frame = +2
Query: 104 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGL 283
F + +GG + A S V P++ + L V K E + + G+ + +I K G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGE-REFTGLGNCLTKIFKADGI 172
Query: 284 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXXXXXXXXXTS 463
+RG +V +A F F D + + K T F + S
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPD--PKKTPFLISWGIAQVVTTVAGIVS 230
Query: 464 LCFVYPLDFARTRLAADVGQGDGQ 535
YP D R R+ G+ +
Sbjct: 231 ----YPFDTVRRRMMMQSGRAKSE 250
Score = 27.1 bits (57), Expect = 0.12
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +2
Query: 164 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 322
P + V+ + +Q S + + YK + + I K +G +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 6.1
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1
Query: 219 AICLLTCWT 193
A C+L+CWT
Sbjct: 103 ATCVLSCWT 111
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 6.1
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1
Query: 219 AICLLTCWT 193
A C+L+CWT
Sbjct: 156 ATCVLSCWT 164
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.4 bits (43), Expect = 6.1
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 307 EVTTPE*EQTLLLGNADEGVDDTLVAL--VLGDLF 209
E+T P E+T+ + N E + +T V +L D F
Sbjct: 368 EITVPSNEETIDINNGAELMQETHVCFFSLLRDAF 402
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,058
Number of Sequences: 438
Number of extensions: 2626
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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