Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H12
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0239 - 14680013-14680291,14680560-14680649,14680654-146810...    26   7.9  
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427...    26   7.9  
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178...    26   7.9  
03_01_0109 - 863381-863575,863749-863795,863893-863980,864078-86...    26   7.9  

>08_02_0239 -
           14680013-14680291,14680560-14680649,14680654-14681047,
           14682052-14682137,14683327-14683465,14683470-14683585
          Length = 367

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 27  CHATRKKNVHNFINLLRASRRDRLKCI 107
           C+AT  +  H  +N++ A   D +KC+
Sbjct: 152 CNATVNRYFHKVLNVVHAMAADIIKCV 178


>04_04_0923 +
           29441740-29441980,29442321-29442401,29442630-29442719,
           29443123-29443203,29443721-29443774,29444062-29444111,
           29444542-29444623,29444734-29444838,29445514-29445641,
           29445726-29445797,29445887-29445937,29446029-29446100,
           29446201-29446278,29446446-29447270,29447648-29448556
          Length = 972

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/54 (18%), Positives = 26/54 (48%)
 Frame = -1

Query: 163 YNIVQLLL*FFKIKXSVPNIHLSRSLREARKRFIKLWTFFFLVA*QIYYYTIRV 2
           Y+I+  L+ + ++  ++ N+          KR  KLW+ +++    +  Y  ++
Sbjct: 755 YSIISFLIEYVRVMDTIQNLEQLDDHNSRTKRPSKLWSHYYIEYQAVKLYNSKI 808


>03_05_0226 -
           22115285-22115404,22115477-22116661,22117037-22117861,
           22118029-22118106,22118370-22118420,22118510-22118581,
           22118666-22118667,22119453-22119557,22119668-22119749,
           22120178-22120227,22120514-22120567,22121084-22121164,
           22121567-22121656,22121884-22121964,22122304-22122544
          Length = 1038

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/54 (18%), Positives = 26/54 (48%)
 Frame = -1

Query: 163 YNIVQLLL*FFKIKXSVPNIHLSRSLREARKRFIKLWTFFFLVA*QIYYYTIRV 2
           Y+I+  L+ + ++  ++ N+          KR  KLW+ +++    +  Y  ++
Sbjct: 689 YSIISFLIEYVRVMDTIQNLEQLDDHNSRTKRPSKLWSHYYIEYQAVKLYNSKI 742


>03_01_0109 -
           863381-863575,863749-863795,863893-863980,864078-864159,
           864264-864420,864501-864583,864724-864955,865032-865146
          Length = 332

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 329 VQSLTRVTSYTSRLLSLAIP*HLIVS 252
           + SL  V ++  R LSL +P HL+++
Sbjct: 92  LSSLASVRAFADRFLSLGLPLHLLIN 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,406,157
Number of Sequences: 37544
Number of extensions: 78727
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)