Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H11
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   2.6  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   4.6  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   4.6  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   6.1  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    25   6.1  

>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 3   TRNFSIDHSRLKVFYNITFIIFYLIS 80
           TRN S  +SR K  YN    I+YL++
Sbjct: 551 TRNISRQYSRDKFHYNQRTTIYYLVA 576


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 427 HFYWKKKSYSLSVKATRYYLLLSKEIKNITMT 332
           HF  +KKS   S K+++ Y ++S  +KN+  T
Sbjct: 185 HFKKEKKSKHSSGKSSKKYKVISPGLKNLGAT 216


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 403 YSLSVKATRYYLLLSKEIK 347
           +SLS KATR+Y  LS+ +K
Sbjct: 70  WSLSRKATRFYRWLSRSLK 88


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 3   TRNFSIDHSRLKVFYNITFIIFYLIS 80
           TR +S  +SR K  YN    I+YL++
Sbjct: 551 TRKYSRQYSRDKFHYNQRTTIYYLVA 576


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/63 (22%), Positives = 26/63 (41%)
 Frame = +3

Query: 3   TRNFSIDHSRLKVFYNITFIIFYLIS*EKAFHLKKNVNTLRWRFCLRLCTMSAAVCNFFF 182
           +R F+        F+++  +   L+S    +      N + + F L LC +     NF +
Sbjct: 436 SREFTEKSVSAHEFFSLEDVQHILLSYGSDYFTNNGSNPVMYFFLLMLCGLYERAINFLY 495

Query: 183 FYF 191
            YF
Sbjct: 496 PYF 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,450,903
Number of Sequences: 5004
Number of extensions: 22542
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)