Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H10
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   2.9  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   6.8  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        25   9.0  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.0  

>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 77  CGVLYTYPENFRAY 118
           C  L+TYPE FR Y
Sbjct: 218 CEALFTYPEKFRLY 231


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 277 SDSCSQQTLPSALSMLVLYPPGFSRSFSLVVSPNTKSGATFTFAP 143
           S S S +T  S +    +Y  G S  F+  ++P T S ++ TF P
Sbjct: 20  SSSVSVET-GSCVRYTTIYSSG-SSEFTSTITPETPSSSSSTFVP 62


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -2

Query: 283 VVSDSCSQQTLPSALSMLVLYPPGFSRSFSLVVSPNTKSGATFTFAPEY---CAAINAVS 113
           V S S S + L  ALS L + PP  S + +L  + NTK       +P+       +NA+ 
Sbjct: 206 VSSQSTSAKDLV-ALSNLNILPPDTSNNENLNPTSNTKQSVGDNTSPQTVIDTEGLNAIK 264

Query: 112 AEI 104
           A++
Sbjct: 265 ADL 267


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 304 RWRPGNTGTLFVAXWASWADSELLP 378
           ++ P  +    VA +A W +SELLP
Sbjct: 260 KYCPNTSVKEVVASYAKWKESELLP 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,272
Number of Sequences: 5004
Number of extensions: 45485
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)