Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H10
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671...    35   0.034
09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122           32   0.24 
04_03_0811 - 19909128-19912214                                         31   0.42 
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899...    31   0.73 
10_01_0130 + 1540412-1541173                                           29   3.0  
02_01_0615 - 4604373-4604537,4604618-4604707,4604871-4604989,460...    28   3.9  
01_06_1312 - 36205549-36206649,36207558-36207883,36209083-362091...    28   3.9  

>02_02_0095 +
           6716327-6716335,6717302-6717451,6717523-6717583,
           6717646-6717725,6717802-6717903,6717982-6718471,
           6718796-6719171,6720320-6720379,6720887-6721056,
           6721287-6721340,6721384-6721523,6722362-6722511,
           6722582-6722642,6722705-6722784,6722933-6723034,
           6723111-6723612,6724401-6724776,6725419-6725493,
           6726058-6726198,6726264-6726282
          Length = 1065

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 108 SALTALIAAQYSGANVKVAPDFVFGETTRLK--LLENPGG*STSIESADGKV 257
           +A  ALIAA+YSG  V++A +F  G + +    L  NP G    +E+ DG V
Sbjct: 574 NAFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGPV 625



 Score = 33.5 bits (73), Expect = 0.10
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 108 SALTALIAAQYSGANVKVAPDFVFGETTRLK--LLENPGG*STSIESADGKV 257
           +A  ALIAA+YSG  V++  +F  G + +    L  NP G    +E+ DG V
Sbjct: 13  NAFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGPV 64


>09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122
          Length = 530

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 329 RCLLQXGPHGLTVNCCRHPAWVFPYLGIMQFNKQNV 436
           RC LQ G H +  NCCR   W +   G    + Q +
Sbjct: 16  RCTLQMGAHLVETNCCRERVWRYAMHGSCSIDIQRL 51


>04_03_0811 - 19909128-19912214
          Length = 1028

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = +3

Query: 93  LIQKISALTALIAAQYSGANVKVAPDFVFGETTRLKLLE 209
           L + ISAL++L+  + SG  +   PD++F E  +L+LL+
Sbjct: 446 LPRSISALSSLLTLEISGTKLTSLPDWMFIEMQQLQLLK 484


>06_03_0529 -
           21788132-21788395,21788414-21788511,21789458-21789953,
           21790033-21790134,21790218-21790270,21790354-21790414,
           21790491-21790640,21791298-21791350,21794125-21794152
          Length = 434

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 108 SALTALIAAQYSGANVKVAPDFVFGETTRLK--LLENPGG*STSIESADGKV 257
           +A  ALIAA+Y+G  V++  +F  G + +    L  NP G    +E+ +G V
Sbjct: 37  NAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGAV 88


>10_01_0130 + 1540412-1541173
          Length = 253

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 483 PSRSCSAASKSFFARSTFCLLNCMMPK 403
           PS + +AASK +FA   FC+     PK
Sbjct: 208 PSPAAAAASKMYFAFCPFCVAKAAQPK 234


>02_01_0615 -
           4604373-4604537,4604618-4604707,4604871-4604989,
           4605132-4605234,4605318-4605414,4605512-4605575,
           4605673-4605805,4605899-4606143,4606263-4606439,
           4607110-4607419
          Length = 500

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 468 SAASKSFFARSTFCLLNCMMPKYGKTHAGCRQQFTVSP*GPXCNKQRACVARSPP 304
           S++S+ FF      +L+C +P  G+TH       + SP GP  +   A     PP
Sbjct: 11  SSSSRFFFLLVLVLVLSCSLPANGRTHRSPAAAASPSP-GPGPSPAPATPRVVPP 64


>01_06_1312 -
           36205549-36206649,36207558-36207883,36209083-36209198,
           36210472-36211577
          Length = 882

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = -2

Query: 286 HVVSDSCSQQTLPSALSMLVLYPPGFSRSFSLVVSPNTKSGATFTFAPEYCAAINAVSAE 107
           HV SDS S    PS +        G   S S  +SP ++SG        Y    N + A 
Sbjct: 49  HVASDSSSPDDNPSDIRPPSRDSDG-DHSGSATISPASRSGRGRRVTTVYNEGSNRIRAR 107

Query: 106 IFWISIKY 83
           I  IS+ +
Sbjct: 108 IILISVPF 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,923,553
Number of Sequences: 37544
Number of extensions: 340789
Number of successful extensions: 792
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)