Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H10
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U80455-10|AAB37887.2|  395|Caenorhabditis elegans Activated in b...    28   4.6  
U61946-9|AAC24393.1|  202|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    28   4.6  
U80837-6|AAB37906.1|  172|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U39652-1|AAA80403.2|  552|Caenorhabditis elegans Abnormal cell m...    27   8.0  
AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical ...    27   8.0  
AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical ...    27   8.0  
AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical ...    27   8.0  
AB126261-1|BAD02168.1|  552|Caenorhabditis elegans MIG-23 protein.     27   8.0  

>Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical
           protein F17C11.9b protein.
          Length = 373

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 389 WVFPYLGIMQFNKQNVERAKNDLLAALQLLD 481
           +V P +    F+K+ VE+ KN+L   LQ+LD
Sbjct: 66  YVLPSVSAANFDKKTVEQYKNELNGQLQVLD 96


>Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical
           protein F17C11.9a protein.
          Length = 398

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 389 WVFPYLGIMQFNKQNVERAKNDLLAALQLLD 481
           +V P +    F+K+ VE+ KN+L   LQ+LD
Sbjct: 91  YVLPSVSAANFDKKTVEQYKNELNGQLQVLD 121


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 310  STSQVIICHVVSDSCSQQTLPSALSMLVLYPPGFSRSFSLVVSPNTKS 167
            S  Q++I  + S   SQ   P+  +  V+YP G S S    +SP   S
Sbjct: 1081 SQLQLVIPSISSSQSSQSAEPARETCYVMYPSGPSTSVGSQLSPGGAS 1128


>U80455-10|AAB37887.2|  395|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 11 protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -2

Query: 388 CRMPAA--VHCQPMRPXLQQTTCLCCQVSTSQVIICHVVSDSCSQQTLPSALS 236
           C +PAA   +CQP +    Q +C C Q    Q   C        QQ  P+  S
Sbjct: 37  CAIPAAPQCNCQPAQTNTAQQSCSCAQ--AQQPSSCGCAQQYQQQQCAPTCQS 87


>U61946-9|AAC24393.1|  202|Caenorhabditis elegans Hypothetical
           protein F47C12.8 protein.
          Length = 202

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 65  IKHGCGVLYTYPENF 109
           IKH CG LY Y E+F
Sbjct: 33  IKHWCGTLYVYEEDF 47


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 310  STSQVIICHVVSDSCSQQTLPSALSMLVLYPPGFSRSFSLVVSPNTKS 167
            S  Q++I  + S   SQ   P+  +  V+YP G S S    +SP   S
Sbjct: 1081 SQLQLVIPSISSSQSSQSAEPARETCYVMYPSGPSTSVGSQLSPGGAS 1128


>U80837-6|AAB37906.1|  172|Caenorhabditis elegans Hypothetical
           protein F07E5.7 protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 11/118 (9%)
 Frame = -2

Query: 382 MPAAVHCQPMRPXLQQTTC-----LCCQVSTSQVIICHVVSDSCSQQTLPSALSMLVLYP 218
           M  +   + + P +  TTC     L  ++  ++V  C VV   C+   +P  ++   ++ 
Sbjct: 28  METSTMTEKVCPEMPATTCMDLIKLGAKLELAEVDGCQVVQ--CTGGQIPRLITRNSVFS 85

Query: 217 PGFSRSFS-----LVVSPNTKSG-ATFTFAPEYCAAINAVSAEIFWISIKYPAAMFDL 62
           P      S       V P T +G    +F   Y    +  +   +W   KYP  + DL
Sbjct: 86  PKLYAGLSDATIVFPVPPTTLAGFGGKSFFDYYGLICDTFNGNFYWTMTKYPDGLIDL 143


>U39652-1|AAA80403.2|  552|Caenorhabditis elegans Abnormal cell
           migration protein 23 protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 316 GNTGT-LFVAXWASWADSELL 375
           G+TGT LFV  W S +DSEL+
Sbjct: 51  GSTGTRLFVYNWISTSDSELI 71


>AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.6 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
 Frame = -2

Query: 388 CRMPAAVHCQPMRPXLQQTTCLCCQVSTSQVII-----CHVVSDSCSQ 260
           C+ P+A  CQ  +   QQ   +C Q  T Q  +     C     SC Q
Sbjct: 167 CQQPSAPQCQQCQNTCQQYAPVCQQQCTPQCTLPSAPACQQCQTSCQQ 214


>AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.3 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
 Frame = -2

Query: 388 CRMPAAVHCQPMRPXLQQTTCLCCQVSTSQVII-----CHVVSDSCSQ 260
           C+ P+A  CQ  +   QQ   +C Q  T Q  +     C     SC Q
Sbjct: 167 CQQPSAPQCQQCQNTCQQYAPVCQQQCTPQCTLPSAPACQQCQTSCQQ 214


>AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical
           protein Y5H2A.4 protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
 Frame = -2

Query: 388 CRMPAAVHCQPMRPXLQQTTCLCCQVSTSQVI-----ICHVVSDSCSQ 260
           C+ PAA  CQ  +   QQ   +C Q    Q       +C     SC Q
Sbjct: 290 CQQPAAPQCQQCQTTCQQFAPVCQQQCAPQCTLPSAPVCQQCQTSCQQ 337


>AB126261-1|BAD02168.1|  552|Caenorhabditis elegans MIG-23 protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 316 GNTGT-LFVAXWASWADSELL 375
           G+TGT LFV  W S +DSEL+
Sbjct: 51  GSTGTRLFVYNWISTSDSELI 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,936,021
Number of Sequences: 27780
Number of extensions: 278066
Number of successful extensions: 705
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)