Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H09
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   2.2  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   2.2  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   6.8  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    25   9.0  

>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 117 NSNAHSDVILFTWITFQWKTTLFLHRLRHICCIFYSSPKVDW 242
           +SN+H       +  F W+   FLH + H   +FY S    W
Sbjct: 399 SSNSHYSQFWAIFQAFVWR---FLHSIIHAFILFYQSKSKAW 437


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 30  FLSTVRCRESGTFQSSPSDLLVAKRTRLGNS 122
           F + ++  +S + QS+PS+L+ ++ TR+  S
Sbjct: 492 FSNPIKSSDSVSLQSTPSELITSQLTRIAKS 522


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 36   STVRCRESGTFQSSPSDLLVAKRTRLGNSNAHSDVI 143
            +T+ C  SGT  SSPS   +A  T LG SN  + ++
Sbjct: 922  NTITCVVSGTMVSSPS---LANITILGLSNPPNTIL 954


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 210 CIFYSSPKVDWYVEN*SRIIIWDREEMKNIYYD-AVCLTQIFYI 338
           C F ++      + N   +   ++ E++N+YYD  +C +  +Y+
Sbjct: 189 CFFLTNSLFKRLLNNREALSKDEKSELQNLYYDLLLCFSYSYYV 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,949
Number of Sequences: 5004
Number of extensions: 40780
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)