Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H08
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    27   1.8  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    25   5.5  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   7.3  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    25   9.6  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.6  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 365 CLFLTMEGTTEKDCSPLWNLHQQIVSDMTILTXH 466
           C+++ +  T E D  PLW + ++++S  ++ T H
Sbjct: 279 CIYICVTRTMEID-DPLWEIVEEMLSPSSLYTLH 311


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 178 MNQTIVTPIHSMKYLNLFSTSRNYSS 101
           MN+   TP   MK+ NL S ++N S+
Sbjct: 136 MNRLGFTPSQFMKFYNLLSNNKNVSN 161


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 205  DLLPCFLYSYSEVKCRYLS-II*K*IYFSIRKW 300
            +LLP   ++Y   +C YL+ I+ K +    R+W
Sbjct: 1089 ELLPAICFNYDRQECEYLAEIVFKTLVEKEREW 1121


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 115 RNYSSTFSFKKMNTYF 68
           R Y STFS++ M+ YF
Sbjct: 182 RQYYSTFSYRDMSIYF 197


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 821

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = -3

Query: 48 KTNSKHDLIKSDKPS 4
          +TNS+H LI++D+P+
Sbjct: 3  QTNSRHSLIETDEPT 17


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,494
Number of Sequences: 5004
Number of extensions: 50800
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)