Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H08
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583...    29   2.4  
02_03_0101 + 15233783-15234601                                         29   2.4  
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510...    28   4.2  
04_04_1423 - 33455818-33457076,33457165-33457201                       28   4.2  
03_05_0350 + 23368111-23368219,23368519-23368526,23368650-233686...    28   5.6  
11_01_0758 + 6362500-6363233,6363709-6365500                           27   7.4  
08_01_0218 + 1743566-1745537,1746834-1747696,1748329-1748991           27   9.8  

>03_05_0712 -
           27057858-27057941,27058093-27058182,27058268-27058384,
           27059759-27059866,27060314-27060406,27060499-27060669,
           27061505-27061757,27061860-27062138,27062939-27063273,
           27063364-27064332,27064711-27065182,27065243-27065291,
           27066564-27066804,27067606-27067695,27068172-27068294,
           27068365-27068418
          Length = 1175

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 132 IFFQLVETIRAHFHSRK*ILIFIETCICKTNSKHD 28
           +F  L++ I   +H RK +++  E  +CK  + HD
Sbjct: 451 LFMDLLKPIYQQWHLRKLLVLAKEDAVCKRQNNHD 485


>02_03_0101 + 15233783-15234601
          Length = 272

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 457 DGPSVYRLWIIRNNPRQILKCTSPGWGMY 543
           DG    +LW+ R   R  + C + GWG Y
Sbjct: 75  DGEVTGKLWLFRYWKRDDVHCLTKGWGCY 103


>07_03_1757 +
           29250163-29250349,29250612-29250813,29250898-29251008,
           29251112-29251160,29251247-29251353,29251439-29251942,
           29252486-29252614,29252865-29253161,29253274-29253720,
           29253828-29253893,29254109-29254169,29254314-29254463,
           29254555-29254689,29254791-29254818,29255430-29255479
          Length = 840

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 169 TIVTPIHSMKYLNLFSTSRNYSSTFSFKK 83
           T + P    KYL L S  R YSST S+K+
Sbjct: 306 TALDPSPDEKYLMLTSVHRPYSSTVSYKR 334


>04_04_1423 - 33455818-33457076,33457165-33457201
          Length = 431

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 512 KICRGLLRIIQRR*TDGPSRSSYLTLSAGEDSIAA-NNPSL*FPPLS 375
           ++C   L  +Q R  D PS  + + +  GED IAA  NP     P S
Sbjct: 361 RVCMVALWCVQYRPEDRPSMGNVVRMLEGEDHIAAPRNPFAHLAPYS 407


>03_05_0350 +
           23368111-23368219,23368519-23368526,23368650-23368658,
           23368768-23368839,23368978-23369097,23369638-23370058,
           23370131-23370285,23370461-23370625,23370822-23370825,
           23371739-23371799,23371933-23372035,23372422-23372854,
           23372978-23373120,23373608-23373740,23375567-23375576,
           23375852-23375975,23376595-23377012,23377153-23377343,
           23377569-23377811
          Length = 973

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 145 MKYLNLFSTSRNYSSTFSFKKMNTYFHRNMHL*NKF 38
           M+ LN  ST+R+    + FK M   FH+ M + +KF
Sbjct: 380 MRKLNTRSTARDDQEKYFFKVMIGDFHKRMTIPDKF 415


>11_01_0758 + 6362500-6363233,6363709-6365500
          Length = 841

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 149 VNWCYNSLIHVTDTCL 196
           VN CYNSL H   TCL
Sbjct: 386 VNLCYNSLPHCLKTCL 401


>08_01_0218 + 1743566-1745537,1746834-1747696,1748329-1748991
          Length = 1165

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 403  LFAAMESSPADSVRYDDLDGPSVYRLWIIRNNP 501
            LF   + SP D +R DD+D   VY + + +  P
Sbjct: 1112 LFHCFDWSPPDGLRPDDIDTQEVYGMTMPKAKP 1144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,304
Number of Sequences: 37544
Number of extensions: 264690
Number of successful extensions: 478
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)