Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H08
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73425-4|CAA97786.1|  667|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z30317-1|CAA82967.1|  213|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    27   6.7  
Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z75527-5|CAA99776.1|  340|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z73425-4|CAA97786.1|  667|Caenorhabditis elegans Hypothetical
           protein F12F6.8 protein.
          Length = 667

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 140 FHTVNWCYNSLIHVTDTCL*ILICYHVFCIHIVK*NVGI 256
           F T++WC++++       L  L C+  FCI IVK N GI
Sbjct: 449 FQTIHWCFDAI-----RILEHLTCWKEFCIEIVK-NGGI 481


>Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical
           protein F56G4.1 protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 353 ILSLCLFLTMEGTTEKDCSP-LWNLHQQIVSDMTIL-TXHLFTVFGL 487
           I++LC+F+T EG       P   N+ +Q+   M++L   H FT  G+
Sbjct: 731 IMALCIFMTFEGFQLLIAYPRKQNISEQVQPIMSMLQRAHFFTFVGI 777


>Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical
           protein F56G4.1 protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 353 ILSLCLFLTMEGTTEKDCSP-LWNLHQQIVSDMTIL-TXHLFTVFGL 487
           I++LC+F+T EG       P   N+ +Q+   M++L   H FT  G+
Sbjct: 731 IMALCIFMTFEGFQLLIAYPRKQNISEQVQPIMSMLQRAHFFTFVGI 777


>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = -2

Query: 268 ILYSNTYISLHYMNTENMVTNQYL*TCIGNMNQTIVTPIHSMKYLNLFSTSRNYSSTFSF 89
           +LY   +  L Y   E  V ++     + N+ + I   I S+  L+  +  RN+S  +S 
Sbjct: 138 VLYKKRFDDLTYY--EACVASKIDSEIMWNVCEYIFPQIQSLSNLDKNAVLRNFSPKWSL 195

Query: 88  KKMNTYFHRNMHL 50
              +  F RN HL
Sbjct: 196 LASSIDFERNCHL 208


>Z30317-1|CAA82967.1|  213|Caenorhabditis elegans Hypothetical
           protein T16G12.4 protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 203 IFINMYR*HESN-YCNTNSQYEIFKSFFN*SKLFEHIFIQENEYLF 69
           IF+  Y   E+  Y N   ++++FK F N     E  F QE EY F
Sbjct: 121 IFLTDYFASEAQRYMNYPHEWKVFKDFINYESSEERRFRQEIEYGF 166


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = -2

Query: 268 ILYSNTYISLHYMNTENMVTNQYL*TCIGNMNQTIVTPIHSMKYLNLFSTSRNYSSTFSF 89
           +LY   +  L Y   E  V ++     + N+ + I   I S+  L+  +  RN+S  +S 
Sbjct: 140 VLYKKRFDDLTYY--EACVASKIDSEIMWNVCEYIFPQIQSLSNLDKNAVLRNFSPKWSL 197

Query: 88  KKMNTYFHRNMHL 50
              +  F RN HL
Sbjct: 198 LASSIDFERNCHL 210


>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 346 RNYFEFVFIFDNGGNYREGLFAAMESSPADSVRYDDL 456
           R +F FV  + +G +Y    F +  S PAD   Y+ L
Sbjct: 246 RVFFHFVLNYQDGSDYCWNYFHSTLSGPADENEYNVL 282


>Z75527-5|CAA99776.1|  340|Caenorhabditis elegans Hypothetical
           protein C15C8.5 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 397 LCSSLHCQK*TQTQNNYEITNNNTQLLVFNNC 302
           +C+S +C   T+T+   E  N NT++L  +NC
Sbjct: 133 VCTSNYCHV-TKTETFSEEENQNTEILSVSNC 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,097,349
Number of Sequences: 27780
Number of extensions: 279812
Number of successful extensions: 592
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)