Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H07
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    29   0.59 
SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c...    26   3.1  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   5.5  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   7.2  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    25   9.5  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   9.5  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   9.5  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.5  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   9.5  

>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 371 NVFSIWIIVFNKFSWNFAASS 309
           N+ SIW++V + F W F+A+S
Sbjct: 14  NISSIWLLVVSFFEWLFSATS 34


>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -1

Query: 497 LFQLLAAIIVSHFSFVINALASMAPLSHMIRQFL*LVLPSSKNVFSIWIIVFNKFSWNFA 318
           +FQ ++ I++  FSF    + S+      +  FL  ++PS   +   WI V    S+NF 
Sbjct: 1   MFQFISTILIVIFSFTEKRITSLRGGIVTLGNFLIHLIPSQSGIIP-WIQV---ESFNFQ 56

Query: 317 ASSGVRSAN 291
              G    N
Sbjct: 57  GCEGAVFGN 65


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 462  FLLRYKCTSVHGSPVAYDKTIPLTGPAKFEE 370
            FL +++ T  + + V++D  IPLT   KFEE
Sbjct: 912  FLKQFEVTD-YKADVSWDDIIPLTEREKFEE 941


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 343 KTMIQIENTFFELGRTSQRNCLIICDRGAMDASAFITKEKWETIMAANNWNNVE 504
           KT+ +I + F   G+ ++    +  D     +SAF T+E +E + +  +W N++
Sbjct: 805 KTLKEIAHLFIIDGKNAEEIGKLATDTSRF-SSAFHTEEVYEILHSRIDWLNIK 857


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 165 ANQNQKTVYKLVLTGGPCGGKTTGQSRLSTFFEN 266
           A++  K +YK++L G    GK+T   ++    +N
Sbjct: 27  ASKKDKKIYKVLLLGASDSGKSTISKQIKILNKN 60


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 422 LSHMIRQFL*LVLPSSKNVFSIWIIVFNKFSW--NFAAS 312
           L+ M+ + L +V+P   N   +W IV   + W  +FA S
Sbjct: 687 LARMLNELLKMVVPLITNDVRLWRIVARYYLWRRHFAES 725


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 283 GVKFADLTPDEAAKFQENLLK 345
           G+K A +TPDEA   + NL K
Sbjct: 80  GIKCATITPDEARVKEYNLKK 100


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
 Frame = -3

Query: 522 ISVITQFHVIPIVGGHYRLPFLLRYKCTS-----VHGSPVAYDKTIPLTGPAKF 376
           +   T+  + PI  G Y   F   Y  TS     VH S   +  ++P+     F
Sbjct: 158 VPTTTESSIHPITTGFYNTTFTTGYFNTSVTSVAVHNSTTVFPTSVPIVNTTSF 211


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
            Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 174  NQKTVYKLVLTGGPCGGKTTGQSRLSTFFENLGWKWWCEICRS 302
            +Q  + +L+++   C     GQ  L      LG+K WC  C+S
Sbjct: 1092 SQLLLERLMISSDACDVDVCGQCGL------LGYKGWCNSCQS 1128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,755
Number of Sequences: 5004
Number of extensions: 47487
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)