Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H07
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0386 + 2799022-2799293,2801419-2803000,2803351-2803404           31   0.59 
01_06_1271 + 35890317-35890762,35891113-35891173,35891669-358918...    31   0.79 
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353...    30   1.4  
01_06_0011 - 25559099-25559238,25559781-25559814,25560172-255603...    28   4.2  
06_03_1234 - 28586365-28587973,28590411-28590694                       28   5.5  
05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596...    27   7.3  

>02_01_0386 + 2799022-2799293,2801419-2803000,2803351-2803404
          Length = 635

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 368 HSSNLAGPVKGIVLSYATGEPWTLVHL 448
           HS+ + G  K IVL   TGE WTL  L
Sbjct: 587 HSTCVVGGTKAIVLGGQTGEEWTLTEL 613


>01_06_1271 +
           35890317-35890762,35891113-35891173,35891669-35891813,
           35891903-35891982,35892465-35892548,35892644-35892718,
           35893150-35893242,35893315-35893503
          Length = 390

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -1

Query: 521 YLLSHNSTLFQLLAAIIVSHFSFVINALASMAPLSHM 411
           YLL     LF LL A+I S F  +   L S++P SH+
Sbjct: 37  YLLREQRLLFVLLGALIASSFFLLRPYLFSLSPSSHV 73


>02_05_0568 - 30034280-30034393,30034888-30035163,30035246-30035371,
            30035595-30035753,30035893-30036063,30036374-30036493,
            30036565-30036924,30038800-30039686,30039790-30040363,
            30041379-30041507,30042423-30042494,30042572-30042728,
            30042974-30043023,30043569-30044327
          Length = 1317

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 519  SVITQFHVIPIVGGHYRLPFLLRYKCTSVHGSPVAYDKTIPLTGPAKFE 373
            S ITQ     ++ GH +L  LL       H + V     +P+TGP + E
Sbjct: 1100 SSITQNLTAELLDGHRKLLALLASGNAKAHSTNVLQPNNVPVTGPPEVE 1148


>01_06_0011 -
           25559099-25559238,25559781-25559814,25560172-25560333,
           25560335-25560454
          Length = 151

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 270 GWKWWCEICR 299
           GW WWC +CR
Sbjct: 3   GWWWWCALCR 12


>06_03_1234 - 28586365-28587973,28590411-28590694
          Length = 630

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 368 HSSNLAGPVKGIVLSYATGEPWTLVHL 448
           HS+ + G  K IVL   TGE W L  +
Sbjct: 594 HSTCVVGGTKAIVLGGQTGEEWMLTEI 620


>05_02_0043 +
           5964749-5966406,5966725-5966791,5967174-5967329,
           5967782-5967865,5968020-5968073
          Length = 672

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 441 TSVHGSPVAYDKTIPLTGPAKFEECILNLDHCF 343
           T++    V YD ++P+ G + F  C +NL   F
Sbjct: 563 TTLQCDHVIYDASVPILGVSLFYRCFINLFSSF 595


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,251,315
Number of Sequences: 37544
Number of extensions: 312103
Number of successful extensions: 799
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)