Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H07
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   3.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.1  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 246 LSTFFENLGWKWWCEICR 299
           LS F++   W+W   IC+
Sbjct: 91  LSVFWQQYPWQWGLGICK 108


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 541 PYARCDYICYHTIPRY 494
           PY R ++ CY+++ R+
Sbjct: 9   PYCRRNFSCYYSLKRH 24


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 377 SKNVFSIWIIVFNKFSWNF 321
           S+ VF +  I+FN   W+F
Sbjct: 448 SRIVFPVAFIIFNILYWSF 466


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 487 NWNNVELCDNRYNHI 531
           NW +  +CD  YN++
Sbjct: 55  NWRSYVVCDVAYNNV 69


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +1

Query: 418 DRGAMDASAFITKEKWETIMAANNWNNV 501
           D    D S+FIT  +W+ +      N +
Sbjct: 182 DEAGGDISSFITNGEWDLLGVPGKRNEI 209


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 484 NNWNNVELCDNRYNH 528
           NN+NN    +N YN+
Sbjct: 99  NNYNNYNYNNNNYNN 113


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 174  NQKTVYKLVLTGGPCGGKTTG 236
            N KT++ L +   P G KTTG
Sbjct: 1249 NIKTLHGLKVIPTPAGLKTTG 1269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,214
Number of Sequences: 438
Number of extensions: 3472
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)