Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H06
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    28   0.61 
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    27   1.1  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    25   4.3  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    25   4.3  
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c...    25   5.7  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    25   5.7  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   7.5  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   7.5  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    24   9.9  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    24   9.9  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 28.3 bits (60), Expect = 0.61
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 156  THTGAEGDFQHKEYLLDRDK 97
            THT A+GD +HK Y L +D+
Sbjct: 1254 THTKAKGDIEHKVYQLLKDQ 1273


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 179 EPSKVQPLHTLAQKATSNTKSTY*TEIKTF 90
           + +K+QPL  LA K  +N  ST   E KTF
Sbjct: 598 DSAKMQPLDVLASKRYNNAFSTETAERKTF 627


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 382 GIARYTCPETKLSLVDSTVQVGSTLRLSV-NQP 287
           GIA+ + P  K S   ST+  GST++ S+ NQP
Sbjct: 37  GIAKVSIPTPKPSTPLSTLTNGSTIQQSMTNQP 69


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 157 YTHWRRRRLPTQRVP 113
           +THW RR L  QR+P
Sbjct: 409 FTHWSRRLLTFQRLP 423


>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 102 DKNLPYCIGTIQTDKYVNKCLYFNRAA 22
           DK L  CIGT +    V    YF++ A
Sbjct: 60  DKQLRGCIGTFRARPLVTNLTYFSKQA 86


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 227 KKITFAVACLLALSSVYAGDRLV 295
           ++ TF V C++ L S   GD++V
Sbjct: 313 RRATFGVECVICLESFTKGDKVV 335


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 87  YCIGTIQTDKYVNKCLYFN 31
           YC+ +++ D+YV+  + FN
Sbjct: 170 YCLNSLRKDQYVDLAIQFN 188


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
            Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 249  LVSWLCLAFTQVTGWLTERRNVEPT*TVLSTNDNFVSGQV*RAIPRIP*LQPR 407
            + SWL     +V   L E+RNV+    V   + +  S ++   + R+  + PR
Sbjct: 897  IASWLQFELREVQRVLAEKRNVQLVLKVFCISQSASSNRMLDTLGRVCQISPR 949


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 427 RPEVRQRRGCSHGIRGIARYTCPETKLSLVDSTVQVGSTLRLSV 296
           R  V + R C H     A+YTCPE  L+ V   +   + L +++
Sbjct: 793 RISVLKSRACKHKE---AKYTCPEIFLNAVSDKLVNTAVLFINI 833


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 358 LGKCNAQYREYHDYSHVAGELQAYANLYL 444
           +G   A Y  + DYSHV         LY+
Sbjct: 216 IGSTTAGYHGWFDYSHVISRFNEVPALYV 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,955
Number of Sequences: 5004
Number of extensions: 38632
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)