Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_H06
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0120 + 1119319-1119447,1120565-1120632,1121682-1121928,112... 30 1.1
11_06_0091 + 19967390-19969825 29 2.4
10_02_0148 - 5859664-5859828,5859916-5860043,5860310-5860451,586... 29 2.4
03_05_0807 + 27849637-27849823,27850002-27850294,27850736-278509... 29 2.4
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 28 3.2
06_01_1112 - 9157776-9158149,9158248-9161158 27 5.6
03_02_0387 - 8016399-8016575,8016661-8016788,8017073-8017214,801... 27 5.6
02_05_0883 - 32481502-32483085 27 5.6
10_08_1064 + 22636603-22636785,22636901-22637671,22637749-22638960 27 7.4
09_06_0248 + 21848346-21848907,21849026-21849583,21849889-218499... 27 9.8
03_01_0314 - 2477593-2480685 27 9.8
02_05_1205 + 34939062-34939919 27 9.8
02_01_0705 - 5259949-5263887,5266207-5266509 27 9.8
>01_01_0120 +
1119319-1119447,1120565-1120632,1121682-1121928,
1122430-1122498,1122782-1122907,1123326-1123406,
1123484-1123561,1124084-1124319,1124399-1124545,
1124864-1125152,1125231-1125352,1125713-1125749
Length = 542
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 74 VPIQYGRFLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNRLGTMKKITFAVAC 253
VP L S SL K+ V ++ +S +V LI S +LG + T+AV C
Sbjct: 255 VPAPSSYLLKSSGLKSLFVKASGVSVSIQVDVSNTKVDYLINSACEKLGVKAQDTYAVLC 314
>11_06_0091 + 19967390-19969825
Length = 811
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/81 (22%), Positives = 32/81 (39%)
Frame = +2
Query: 50 FTYLSVCIVPIQYGRFLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNRLGTMK 229
+ L + + P F + +S CW P P +++ + V +I I +
Sbjct: 326 YNSLKIVVDPEWLPPFRVEKAYFSSCWMGPKFPAWLQSQVYIVELIMNDAGIDDTFPDWF 385
Query: 230 KITFAVACLLALSSVYAGDRL 292
TF+ A L +S+ G L
Sbjct: 386 STTFSKATFLEISNNQIGGEL 406
>10_02_0148 -
5859664-5859828,5859916-5860043,5860310-5860451,
5860548-5860643,5860836-5860976,5861799-5861973,
5862416-5862702,5862777-5862870,5863244-5863335,
5863459-5863553,5863648-5863759
Length = 508
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Frame = -3
Query: 201 DGIKFITRTVESAAFTHTGAEG----DFQHKEY--LLDRDKNLPYCIGTIQTDKY-VNKC 43
+G + T T+ESAA HT +G +F Y L+ +K + C+G++ +KY V C
Sbjct: 89 EGARIDTPTLESAAGPHTTVDGKEVVNFASANYLGLIGNEKIIDSCVGSV--EKYGVGSC 146
>03_05_0807 +
27849637-27849823,27850002-27850294,27850736-27850973,
27851075-27851410,27851496-27851581,27851678-27851785,
27851878-27852185,27852265-27852528,27852610-27853381
Length = 863
Score = 28.7 bits (61), Expect = 2.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 392 WYSRYCALHLPRDKVVVGRQHSSSWF 315
W + YCA++ P D V+ G +W+
Sbjct: 643 WVTEYCAIYYPNDGVLQGDVELQAWW 668
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 402 PRRWRTSGLRQPLPQAVIPI 461
PRRWR+SG R+ L + + P+
Sbjct: 29 PRRWRSSGSRRELHEPLFPL 48
>06_01_1112 - 9157776-9158149,9158248-9161158
Length = 1094
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 309 NVEPT*TVLSTNDNFVSGQV*RAIPRIP*LQPRRWRTSGLRQPLPQAVIPIS 464
N P LS +N +SG + I +P L+ + + L P+PQA+ +S
Sbjct: 196 NNTPLLAYLSIGNNSLSGPIPGCIGSLPMLELLELQYNNLTGPVPQAIFNMS 247
>03_02_0387 -
8016399-8016575,8016661-8016788,8017073-8017214,
8017301-8017396,8017572-8017712,8017857-8018031,
8018443-8018575,8018661-8018733,8018807-8018900,
8019890-8019981,8020091-8020185,8020267-8020378
Length = 485
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Frame = -3
Query: 201 DGIKFITRTVESAAFTHTGAEG----DFQHKEY--LLDRDKNLPYCIGTIQTDKY-VNKC 43
DG + T +ESAA HT +G +F Y L+ +K + C+G++ +KY V C
Sbjct: 89 DGARIDTPMLESAAAPHTTIDGKEVINFASANYLGLIGNEKIIDSCVGSL--EKYGVGSC 146
>02_05_0883 - 32481502-32483085
Length = 527
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 119 SLCWKSPSAPVCVKAALST-VRVINLIPSIHNRLGT 223
S C SPS+P+ + ALS RV+ L PS H L T
Sbjct: 109 SACADSPSSPLARRLALSVHARVLKLFPS-HLLLST 143
>10_08_1064 + 22636603-22636785,22636901-22637671,22637749-22638960
Length = 721
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 356 DKVVVGRQHSSSWFNVA 306
+K VG QH+S WFN A
Sbjct: 65 EKRYVGSQHTSEWFNTA 81
>09_06_0248 +
21848346-21848907,21849026-21849583,21849889-21849980,
21850122-21850167,21850236-21850423
Length = 481
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 403 GCSHGIRGIARYTCPETKLSLVDSTVQVGSTLRLSVNQP-VTCVNA 269
G H I I +T P ++S + + G R+ N+P V CVNA
Sbjct: 58 GNGHRIE-ITIFTAPPPQVSYICAWCPTGDPARIFANEPLVGCVNA 102
>03_01_0314 - 2477593-2480685
Length = 1030
Score = 26.6 bits (56), Expect = 9.8
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +3
Query: 243 Q*LVSWLCLAFTQVTGWLTERRNVEPT*TVLSTNDNFVSGQV*RAIPRIP*LQPRRWRTS 422
Q LVS L L + TG + + PT +VL ++NF SG++ P L+ +
Sbjct: 524 QRLVS-LSLRNNRFTGQIPAAVAMMPTLSVLDLSNNFFSGEIPSNFGSSPALEMLNLAYN 582
Query: 423 GLRQPLP 443
L P+P
Sbjct: 583 NLTGPVP 589
>02_05_1205 + 34939062-34939919
Length = 285
Score = 26.6 bits (56), Expect = 9.8
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = +2
Query: 134 SPSAPVCVKAALSTVRVINLIPSIHNRLGTMKKITFAVACLLALSSVYAGDRLVNG 301
SPS P L V VI+ +H RLG + +AVA A + G L G
Sbjct: 18 SPSPPPSTLLQLLEVTVISA-QDLHRRLGRRVRAAYAVAWADAAHKLRTGVDLAGG 72
>02_01_0705 - 5259949-5263887,5266207-5266509
Length = 1413
Score = 26.6 bits (56), Expect = 9.8
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +3
Query: 249 LVSWLCLAFTQVTGWLTERRNVEPT*TVLSTNDNFVSGQV*RAIPRIP*LQPRRWRTSGL 428
LVS L L+ TG + +R T +S +DN ++G + +I ++ LQ + L
Sbjct: 592 LVS-LDLSHNNFTGMIPDRLWESSTILDISLSDNQLTGMITESIGKLLSLQSLSIDRNYL 650
Query: 429 RQPLPQAV 452
+ PLP+++
Sbjct: 651 QGPLPRSI 658
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,279,104
Number of Sequences: 37544
Number of extensions: 250187
Number of successful extensions: 681
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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