Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H06
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64842-3|AAB37082.1|  218|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine rece...    27   8.8  
AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical...    27   8.8  
AC006829-1|AAF60923.1|  258|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U64842-3|AAB37082.1|  218|Caenorhabditis elegans Hypothetical
           protein F25B4.4 protein.
          Length = 218

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 44  HLFTYLSVCIVPIQYGRFLSRSSRYSLCWKSPSAPVCVKA-ALSTVRVIN 190
           H+F  +S    P+ +G     S++  L  KSPSAP   K   LS  R IN
Sbjct: 165 HVFVQMS----PVSHGFGKDASAKAVLTIKSPSAPTSTKGILLSGERTIN 210


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 169 FDGSRYKFNSINTQSPWNN 225
           FDGS + FN IN  SP  N
Sbjct: 228 FDGSPWNFNQINPASPKKN 246


>U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine
           receptor, class v protein31 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/68 (19%), Positives = 31/68 (45%)
 Frame = +2

Query: 47  LFTYLSVCIVPIQYGRFLSRSSRYSLCWKSPSAPVCVKAALSTVRVINLIPSIHNRLGTM 226
           L+  + +C++ +++     +S+ Y++  +   A +C+    +T   +   P I   L T 
Sbjct: 22  LYIMVLICLIKLRFHSKTYQSTFYTILMQHSIADICIMIFYTTTWGLRTKPGIREMLYTY 81

Query: 227 KKITFAVA 250
           +    A A
Sbjct: 82  QHFYVAAA 89


>AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical
           protein C35E7.3 protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +2

Query: 158 KAALSTVRVINLIPSIHNRLGTMKKITFAVACLLALSSVYAGDRLVNGKAQR*TNLNCAV 337
           K A  +V+VI+L+P   +     KK+ F    +             NGK QR     C  
Sbjct: 41  KEAPKSVKVIDLLPLYESDCDRHKKLIFCKNLMKNRQIFKYAYNTENGKFQR-VQCTCCE 99

Query: 338 YQRQL 352
           Y+++L
Sbjct: 100 YKKEL 104


>AC006829-1|AAF60923.1|  258|Caenorhabditis elegans Hypothetical
           protein Y9C12A.1 protein.
          Length = 258

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 24  LRG*NKDIYLRICPSVLYLYST-EGFYLGLVGTLCV 128
           L G N+ +Y+R+ P  +++++T    Y  L+GT+C+
Sbjct: 78  LLGINESLYVRL-PRGMFVWNTLNSLYFLLIGTICL 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,581,856
Number of Sequences: 27780
Number of extensions: 218994
Number of successful extensions: 565
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)