Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H05
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    60   2e-10
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    27   1.4  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   7.6  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   7.6  

>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
 Frame = +2

Query: 257 PFEFTAP-NQKRVEALLAIYPEGHKRGAMIPLLDLAQRQNGGWLPISAMHKVAEILNLPR 433
           P  F  P N +  +A+LA YP   +  A++PLLDLAQRQ+G W+P +AM+++A +  +  
Sbjct: 3   PIRFFKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSI 62

Query: 434 MRVYEVATFY-TMFIRRPIGKYHVQVCTTTPC 526
             V+ +   Y   F  RP  K  V++C +  C
Sbjct: 63  DYVHSLILAYPNDFFWRP-KKPRVRICNSWMC 93


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 19  SPSLNTTVKLVSIHESFANSVFAIFFYKDKK 111
           SPSLNT+V  V I++ F   +  +F  +D +
Sbjct: 226 SPSLNTSVAKVYINQKFIRKLLVLFDSEDPR 256


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 44   SWFRFTNHSRTVFSQYSFIKIKSNIKIM 127
            +WFRF+ H  T F++ S++K    + IM
Sbjct: 940  TWFRFSEHEDTNFTK-SYLKNLKFLSIM 966


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/84 (21%), Positives = 33/84 (39%)
 Frame = +2

Query: 77  VFSQYSFIKIKSNIKIMLSSLKTGVQTLWRMXXXXXXXXXXXXHDSLFVHRDTPEDNPSI 256
           ++S  S I++  NI+  +S+          +            H S+       +     
Sbjct: 48  IYSSTSIIQVWQNIQDFISTKNDNAAFRELVYNLMMRYVSTQKHLSIIERHTFFQTIEKD 107

Query: 257 PFEFTAPNQKRVEALLAIYPEGHK 328
           PF+  A  Q R+++L  +  EGHK
Sbjct: 108 PFQDIAELQLRLKSLSVLTDEGHK 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,716
Number of Sequences: 5004
Number of extensions: 45575
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)