Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H05
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152...   144   3e-35
07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418...    31   0.48 
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979...    31   0.48 

>05_06_0024 +
           25014274-25014375,25014655-25014720,25015117-25015233,
           25015757-25015834,25015911-25016016,25016150-25016196,
           25016386-25016463,25016898-25016963,25017102-25017165,
           25017406-25017428
          Length = 248

 Score =  144 bits (350), Expect = 3e-35
 Identities = 60/112 (53%), Positives = 87/112 (77%)
 Frame = +2

Query: 224 HRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRQNGGWLPISAMH 403
           H D+PE+NP +P+EFT  N K+V  +L+ YP  +K+  +IP+LDLAQ+Q+GGW+P++AM+
Sbjct: 35  HLDSPENNPDMPWEFTEANMKKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMN 94

Query: 404 KVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAVLKA 559
            +A+I+ +  +RVYEVATFYTMF R  +GKYH+ VC TTPC +RGS  + +A
Sbjct: 95  AIAKIVEVAPIRVYEVATFYTMFNRTKVGKYHLLVCGTTPCMIRGSREIEEA 146


>07_01_0564 -
           4183441-4183530,4183683-4183752,4183972-4184063,
           4184141-4184240,4184372-4184478,4184703-4184768,
           4184879-4185013,4185653-4185808,4186113-4186262,
           4186426-4186557,4187604-4187693
          Length = 395

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 232 VSVDEETVMLEGRSGLQTSRRHAPQGLNPS 143
           + +DEE++   G  G QTS RHA Q L+P+
Sbjct: 323 IDIDEESLAFLGEIGQQTSLRHAIQLLSPA 352


>01_06_1273 +
           35896320-35896400,35896548-35896736,35897817-35897948,
           35898093-35898242,35898564-35898719,35899462-35899596,
           35899706-35899771,35900016-35900122,35900258-35900357,
           35900436-35900527,35901026-35901095,35901229-35901318
          Length = 455

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 232 VSVDEETVMLEGRSGLQTSRRHAPQGLNPS 143
           + +DEE++   G  G QTS RHA Q L+P+
Sbjct: 383 IEIDEESLAFLGEIGQQTSLRHAIQLLSPA 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,760,171
Number of Sequences: 37544
Number of extensions: 276480
Number of successful extensions: 664
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)