Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H05
         (561 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M22538-1|AAA75390.1|  249|Homo sapiens NADH-ubiquinone reductase...   188   9e-48
CR456928-1|CAG33209.1|  249|Homo sapiens NDUFV2 protein.              188   9e-48
BC071689-1|AAH71689.1|  249|Homo sapiens NADH dehydrogenase (ubi...   188   9e-48
BC017487-1|AAH17487.1|  249|Homo sapiens NADH dehydrogenase (ubi...   188   9e-48
BC001632-1|AAH01632.1|  249|Homo sapiens NADH dehydrogenase (ubi...   188   9e-48
D88548-1|BAA25988.1|  231|Homo sapiens 24-kDa subunit of complex...   186   5e-47

>M22538-1|AAA75390.1|  249|Homo sapiens NADH-ubiquinone reductase
           protein.
          Length = 249

 Score =  188 bits (459), Expect = 9e-48
 Identities = 82/116 (70%), Positives = 101/116 (87%)
 Frame = +2

Query: 212 SLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRQNGGWLPI 391
           +LFVHRDTPE+NP  PF+FT  N KR+EA++  YPEGHK  A++P+LDLAQRQNG WLPI
Sbjct: 37  ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPI 95

Query: 392 SAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAVLKA 559
           SAM+KVAE+L +P MRVYEVATFYTM+ R+P+GKYH+QVCTTTPC LR SD++L+A
Sbjct: 96  SAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEA 151


>CR456928-1|CAG33209.1|  249|Homo sapiens NDUFV2 protein.
          Length = 249

 Score =  188 bits (459), Expect = 9e-48
 Identities = 82/116 (70%), Positives = 101/116 (87%)
 Frame = +2

Query: 212 SLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRQNGGWLPI 391
           +LFVHRDTPE+NP  PF+FT  N KR+EA++  YPEGHK  A++P+LDLAQRQNG WLPI
Sbjct: 37  ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPI 95

Query: 392 SAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAVLKA 559
           SAM+KVAE+L +P MRVYEVATFYTM+ R+P+GKYH+QVCTTTPC LR SD++L+A
Sbjct: 96  SAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEA 151


>BC071689-1|AAH71689.1|  249|Homo sapiens NADH dehydrogenase
           (ubiquinone) flavoprotein 2, 24kDa protein.
          Length = 249

 Score =  188 bits (459), Expect = 9e-48
 Identities = 82/116 (70%), Positives = 101/116 (87%)
 Frame = +2

Query: 212 SLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRQNGGWLPI 391
           +LFVHRDTPE+NP  PF+FT  N KR+EA++  YPEGHK  A++P+LDLAQRQNG WLPI
Sbjct: 37  ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPI 95

Query: 392 SAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAVLKA 559
           SAM+KVAE+L +P MRVYEVATFYTM+ R+P+GKYH+QVCTTTPC LR SD++L+A
Sbjct: 96  SAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEA 151


>BC017487-1|AAH17487.1|  249|Homo sapiens NADH dehydrogenase
           (ubiquinone) flavoprotein 2, 24kDa protein.
          Length = 249

 Score =  188 bits (459), Expect = 9e-48
 Identities = 82/116 (70%), Positives = 101/116 (87%)
 Frame = +2

Query: 212 SLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRQNGGWLPI 391
           +LFVHRDTPE+NP  PF+FT  N KR+EA++  YPEGHK  A++P+LDLAQRQNG WLPI
Sbjct: 37  ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPI 95

Query: 392 SAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAVLKA 559
           SAM+KVAE+L +P MRVYEVATFYTM+ R+P+GKYH+QVCTTTPC LR SD++L+A
Sbjct: 96  SAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEA 151


>BC001632-1|AAH01632.1|  249|Homo sapiens NADH dehydrogenase
           (ubiquinone) flavoprotein 2, 24kDa protein.
          Length = 249

 Score =  188 bits (459), Expect = 9e-48
 Identities = 82/116 (70%), Positives = 101/116 (87%)
 Frame = +2

Query: 212 SLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRQNGGWLPI 391
           +LFVHRDTPE+NP  PF+FT  N KR+EA++  YPEGHK  A++P+LDLAQRQNG WLPI
Sbjct: 37  ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPI 95

Query: 392 SAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAVLKA 559
           SAM+KVAE+L +P MRVYEVATFYTM+ R+P+GKYH+QVCTTTPC LR SD++L+A
Sbjct: 96  SAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEA 151


>D88548-1|BAA25988.1|  231|Homo sapiens 24-kDa subunit of complex I
           protein.
          Length = 231

 Score =  186 bits (453), Expect = 5e-47
 Identities = 81/116 (69%), Positives = 101/116 (87%)
 Frame = +2

Query: 212 SLFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRQNGGWLPI 391
           +LFVHRDTPE+NP  PF+FT  N KR+EA++  YPEGHK  A++P+LDLAQRQNG WLPI
Sbjct: 19  ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPI 77

Query: 392 SAMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAVLKA 559
           SAM+KVAE+L +P MRVYEVATFYTM+ R+P+GKY++QVCTTTPC LR SD++L+A
Sbjct: 78  SAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYYIQVCTTTPCMLRNSDSILEA 133


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,546,760
Number of Sequences: 237096
Number of extensions: 1492935
Number of successful extensions: 6466
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6460
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)