Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H05
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77663-9|CAB01203.1|  239|Caenorhabditis elegans Hypothetical pr...   173   5e-44
Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U39652-8|AAK82909.1|  334|Caenorhabditis elegans Protein kinase ...    28   5.3  
U39652-7|AAA80405.2|  366|Caenorhabditis elegans Protein kinase ...    28   5.3  
U39652-6|ABI18144.1|  376|Caenorhabditis elegans Protein kinase ...    28   5.3  
J05220-1|AAA27980.1|  376|Caenorhabditis elegans protein ( C.ele...    28   5.3  
U70849-4|AAK67231.1|  179|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z77663-9|CAB01203.1|  239|Caenorhabditis elegans Hypothetical
           protein F53F4.10 protein.
          Length = 239

 Score =  173 bits (422), Expect = 5e-44
 Identities = 76/112 (67%), Positives = 97/112 (86%)
 Frame = +2

Query: 215 LFVHRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRQNGGWLPIS 394
           L VHRDT E+N ++ F+FT+ NQ+R++A++ IYPEGHK GA+IPLLDLAQRQ+G WLPIS
Sbjct: 27  LMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHG-WLPIS 85

Query: 395 AMHKVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAV 550
           AMH+VA+IL +PRMR YEVATFYTMF R+P+GKY +QVC TTPC LRG++ +
Sbjct: 86  AMHEVAKILEVPRMRAYEVATFYTMFNRQPVGKYFLQVCATTPCMLRGAETI 137


>Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical
           protein T06D8.5 protein.
          Length = 395

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 314 PEGHKRGAMIPLLDLAQRQNGGWLPISAMHKVAEILNLPRMRVYEVATFYTM 469
           P+  +R A+   L LAQ   G W+  S +       ++PR+  Y +AT  TM
Sbjct: 162 PDMKRRMALATTLLLAQGGIGWWMVKSGLDPSKNSSDVPRVSQYRLATHLTM 213


>Z35598-1|CAA84656.1| 1343|Caenorhabditis elegans Hypothetical protein
            F10F2.2 protein.
          Length = 1343

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 83   SQYSFIKIKSNIKIMLSSLKTGVQTLW 163
            S +  +KI+ N+ IMLS ++  V  LW
Sbjct: 1199 SSFGPVKIEKNVSIMLSGMENSVLGLW 1225


>U39652-8|AAK82909.1|  334|Caenorhabditis elegans Protein kinase
           protein 2, isoform b protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 280 IRRCKFKRDTRVVFRGVSVDEETVMLEGRSGLQTSR 173
           + RC F+  T VV +G   DE  ++LEG + +   R
Sbjct: 224 LERCDFEPGTHVVEQGQPGDEFFIILEGEANVLQKR 259


>U39652-7|AAA80405.2|  366|Caenorhabditis elegans Protein kinase
           protein 2, isoform a protein.
          Length = 366

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 280 IRRCKFKRDTRVVFRGVSVDEETVMLEGRSGLQTSR 173
           + RC F+  T VV +G   DE  ++LEG + +   R
Sbjct: 256 LERCDFEPGTHVVEQGQPGDEFFIILEGEANVLQKR 291


>U39652-6|ABI18144.1|  376|Caenorhabditis elegans Protein kinase
           protein 2, isoform c protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 280 IRRCKFKRDTRVVFRGVSVDEETVMLEGRSGLQTSR 173
           + RC F+  T VV +G   DE  ++LEG + +   R
Sbjct: 266 LERCDFEPGTHVVEQGQPGDEFFIILEGEANVLQKR 301


>J05220-1|AAA27980.1|  376|Caenorhabditis elegans protein (
           C.elegans cAMP-dependentprotein kinase subunit R mRNA,
           complete cds. ).
          Length = 376

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 280 IRRCKFKRDTRVVFRGVSVDEETVMLEGRSGLQTSR 173
           + RC F+  T VV +G   DE  ++LEG + +   R
Sbjct: 266 LERCDFEPGTHVVEQGQPGDEFFIILEGEANVLQKR 301


>U70849-4|AAK67231.1|  179|Caenorhabditis elegans Hypothetical
           protein F29B9.5 protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = -3

Query: 316 WVDC*EGFNSLLIRRCKFKRDTRVVFRGVSVDEETVMLEGRSGLQTSRRHAPQGLNPSFE 137
           W+    G + L   + KF+  T  V R ++   + V+++G+S +    +  PQGL  ++E
Sbjct: 115 WLCVKYGDDILTRYQSKFEIKTIPVLRVINAAGKMVVVDGKSEVVDKGKADPQGLFAAWE 174

Query: 136 A 134
           A
Sbjct: 175 A 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,781,945
Number of Sequences: 27780
Number of extensions: 251200
Number of successful extensions: 620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)