Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_H04
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    52   8e-09
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    50   4e-08
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   1.3  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    25   1.8  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    23   4.0  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    23   4.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    23   7.1  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    22   9.3  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 52.4 bits (120), Expect = 8e-09
 Identities = 21/32 (65%), Positives = 27/32 (84%)
 Frame = +1

Query: 85  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDN 180
           I+KKRTK F RHQSDR+ ++  +WRKPRGID+
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDS 37


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 50.0 bits (114), Expect = 4e-08
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = +1

Query: 85  IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDN 180
           IVKKRTK F RHQSD + ++  +WRKPRGID+
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDS 37


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -2

Query: 126 RLVTNKSFRPLFDDCRSVNRSDS---HFKLFH*E 34
           R++ ++++RPL DD   + R  S   H KL H E
Sbjct: 385 RIINHENYRPLMDDIEILLRDQSFVGHPKLEHLE 418


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 141 FIITIRLVTNKSFRPLF 91
           +I+T  L+TN +F+PL+
Sbjct: 70  YIVTAYLITNTAFQPLY 86


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +1

Query: 109 FIRHQSDRYDKLKRNWRK 162
           FI+H+ D +DKL++ +++
Sbjct: 22  FIQHRLDLFDKLQKEYKE 39


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 53  KWLSDLFTDRQSSKRGRKDLF 115
           KW   L  DR  SKRG K+ F
Sbjct: 123 KWHLGLTPDRYPSKRGFKESF 143


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 71  TGLIAILNYFTKKRGSEPRGD 9
           TGL  ILN F++ + ++P G+
Sbjct: 937 TGLYPILNMFSRLQYAQPYGN 957


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 109 FIRHQSDRYDKLKRNWRK 162
           F  H  D YD+L  NW++
Sbjct: 822 FCVHTRDVYDELVPNWKE 839


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,589
Number of Sequences: 5004
Number of extensions: 9801
Number of successful extensions: 30
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)